Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.7e-163 578.6 288 100.0
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.0e-154 548.1 288 95.1
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.9e-140 502.7 289 88.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 7.8e-134 480.7 290 86.6
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.6e-123 446.4 291 80.8
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 6.0e-118 427.9 292 76.4
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.7e-117 426.4 289 75.4
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.7e-117 426.4 290 76.2
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 3.0e-117 425.6 290 74.1
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 6.6e-117 424.5 238 85.7
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 7.3e-116 421.0 286 74.5
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 6.2e-115 417.9 268 75.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.2e-115 417.9 265 77.4
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 8.1e-115 417.5 289 74.0
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-114 417.2 268 76.1
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.1e-114 417.2 288 74.0
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.8e-114 416.4 282 74.1
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 4.0e-114 415.2 284 73.6
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 4.0e-114 415.2 284 73.6
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.2e-114 414.8 287 73.9
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 6.8e-114 414.5 288 72.6
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 8.9e-114 414.1 287 72.8
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.0e-113 412.9 268 78.0
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.4e-113 412.1 292 72.3
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 4.4e-113 411.8 286 73.1
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 5.8e-113 411.4 288 71.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 5.8e-113 411.4 287 72.5
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 7.6e-113 411.0 287 73.5
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 7.6e-113 411.0 286 73.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.6e-113 411.0 286 73.4
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.6e-113 411.0 286 73.4
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.7e-112 409.8 265 77.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 3.8e-112 408.7 276 74.3
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.9e-112 408.3 286 72.7
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 4.9e-112 408.3 260 78.1
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 4.9e-112 408.3 248 80.6
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 8.4e-112 407.5 240 80.8
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.4e-111 406.8 259 76.8
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.4e-111 404.8 274 73.7
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 6.0e-110 401.4 286 70.6
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 7.8e-110 401.0 251 77.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 7.8e-110 401.0 258 77.1
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.0e-109 400.6 266 74.8
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.3e-109 400.2 262 75.6
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.0e-109 399.1 240 80.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 3.9e-109 398.7 267 74.2
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 5.1e-109 398.3 260 74.2
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 6.6e-109 397.9 266 74.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.1e-108 397.1 283 71.4
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 1.9e-108 396.4 285 71.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.9e-108 396.4 244 79.1
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.5e-108 396.0 260 75.8
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 3.3e-108 395.6 260 76.5
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 7.3e-108 394.4 281 69.4
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.1e-107 392.9 250 75.6
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.8e-107 392.5 284 70.4
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 3.6e-107 392.1 239 77.4
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 6.2e-107 391.3 260 74.6
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 6.2e-107 391.3 244 76.2
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 6.2e-107 391.3 264 72.7
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 8.1e-107 391.0 286 69.6
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.1e-106 390.6 247 76.9
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.1e-106 390.6 247 76.9
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.1e-106 390.6 268 73.9
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.4e-106 390.2 248 75.0
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 2.4e-106 389.4 275 71.3
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.4e-106 389.4 248 74.2
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.1e-106 389.0 269 73.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 4.0e-106 388.7 246 77.2
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 4.0e-106 388.7 246 77.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 4.0e-106 388.7 240 75.8
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 9.0e-106 387.5 284 69.0
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 9.0e-106 387.5 283 70.0
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.2e-105 387.1 245 76.7
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.0e-105 386.3 290 68.3
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.0e-105 386.3 239 76.6
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.4e-105 385.6 244 75.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.4e-105 385.2 241 77.6
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 4.4e-105 385.2 236 77.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.1e-103 380.6 245 75.1
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-103 380.6 240 77.5
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.1e-103 380.6 278 69.1
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.4e-103 379.4 240 74.2
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 7.1e-103 377.9 241 75.5
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 9.3e-103 377.5 224 80.4
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.6e-102 376.7 286 67.1
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.6e-102 376.7 278 68.7
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.6e-102 376.7 278 68.7
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.6e-102 376.7 241 76.8
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 6.0e-102 374.8 285 67.0
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.0e-101 374.0 257 72.4
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 1.0e-101 374.0 255 74.1
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.3e-101 373.6 243 73.7
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 3.0e-101 372.5 225 79.6
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 3.0e-101 372.5 243 73.7
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 3.0e-101 372.5 240 76.2
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 3.9e-101 372.1 247 73.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.6e-101 371.3 242 74.4
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.1e-100 370.5 220 86.8
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 5.6e-100 368.2 241 74.7
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 5.6e-100 368.2 243 70.8
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.6e-99 366.7 240 74.2
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.8e-99 365.9 243 71.6
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 3.6e-99 365.5 278 69.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.2e-99 364.8 284 65.8
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.0e-98 360.9 278 66.5
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.4e-97 359.0 405 50.9
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.2e-96 356.3 288 65.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.2e-95 352.4 269 68.4
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.1e-91 339.7 225 73.8
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.4e-90 336.3 222 72.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.0e-85 320.9 283 59.7
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.3e-84 315.5 245 65.7
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 5.7e-84 315.1 240 62.1
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 9.6e-84 314.3 238 63.4
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 3.1e-82 309.3 238 64.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 7.6e-81 304.7 191 77.0
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.1e-78 296.6 235 61.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 7.9e-78 294.7 240 64.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-73 280.4 267 55.4
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.1e-71 274.2 191 70.2
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.7e-67 259.2 201 64.2
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 4.8e-67 258.8 226 59.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-66 257.7 262 52.3
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.5e-64 248.4 221 58.4
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-60 237.7 257 49.8
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-59 234.2 156 75.6
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.2e-59 233.4 203 63.1
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.6e-57 227.3 171 63.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-52 211.1 274 46.0
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.6e-46 189.5 220 44.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 4.0e-45 186.0 229 40.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.2e-45 185.7 115 76.5
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.8e-43 179.9 219 43.4
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 6.3e-43 178.7 127 70.1
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.2e-41 174.5 126 69.0
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-38 164.1 142 60.6
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 3.7e-35 152.9 87 80.5
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-32 144.1 147 52.4
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.3e-32 143.7 84 81.0
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 5.0e-32 142.5 116 61.2
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 4.0e-29 132.9 110 65.5
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 3.5e-25 119.8 81 72.8
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.8e-21 107.5 72 70.8
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 5.2e-21 105.9 250 30.0
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.6e-17 92.8 47 87.2
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-16 90.5 195 37.9
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.3e-15 86.3 86 52.3
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-11 74.7 71 53.5
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 8.3e-11 72.0 98 43.9
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 4.6e-09 66.2 233 26.6
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 1.0e-08 65.1 236 28.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.7e-08 64.3 174 28.7
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.9e-08 63.2 241 26.6
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 3.9e-08 63.2 241 26.6
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.9e-08 63.2 244 26.6
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 5.1e-08 62.8 244 26.6
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 8.6e-08 62.0 242 26.4
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 1.1e-07 61.6 231 28.6
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.9e-07 60.8 229 27.1
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-06 58.2 37 73.0
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 3.6e-06 56.6 223 25.6
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 6.2e-06 55.8 28 85.7


User provided reference genes

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