Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-55 219.2 114 100.0
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.5e-37 158.3 91 93.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 4.4e-32 141.4 116 70.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.6e-32 140.6 107 74.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.1e-30 136.7 119 68.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.1e-30 136.7 119 68.1
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.9e-28 128.3 99 71.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.3e-27 125.2 97 70.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.2e-26 123.2 104 70.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 6.9e-25 117.5 93 69.9
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 8.9e-25 117.1 95 67.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.8e-23 111.7 115 53.9
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 8.4e-23 110.5 105 57.1
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.1e-21 105.9 85 71.8
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.7e-21 105.5 110 55.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.1e-19 100.1 111 48.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-19 100.1 107 55.1
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.5e-19 99.8 92 58.7
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.5e-19 99.0 108 52.8
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.3e-19 98.6 111 54.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 7.3e-19 97.4 107 53.3
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.1e-18 95.9 109 55.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.1e-18 95.9 104 55.8
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.8e-18 95.5 113 51.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.1e-18 94.0 111 48.6
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.4e-17 93.2 116 51.7
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.4e-17 92.4 110 48.2
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.1e-17 92.0 103 48.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.1e-17 92.0 111 47.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.9e-17 90.9 107 49.5
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 6.9e-17 90.9 113 48.7
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 9.0e-17 90.5 105 48.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.0e-17 90.5 107 50.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 9.0e-17 90.5 114 46.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 9.0e-17 90.5 114 46.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.2e-16 90.1 114 45.6
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-16 90.1 107 50.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.2e-16 90.1 101 50.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.5e-16 89.7 111 50.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-16 89.4 103 54.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.6e-16 89.0 99 47.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.6e-16 89.0 101 51.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.4e-16 88.6 97 55.7
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.5e-16 88.2 106 48.1
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.8e-16 87.8 114 44.7
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 5.8e-16 87.8 108 48.1
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.8e-16 87.8 102 53.9
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.6e-16 87.4 107 49.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.6e-16 87.4 117 49.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 7.6e-16 87.4 103 52.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 9.9e-16 87.0 106 49.1
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 9.9e-16 87.0 103 47.6
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.3e-15 86.7 102 48.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.9e-15 85.5 105 46.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.9e-15 85.5 108 45.4
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.9e-15 85.5 110 46.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 3.8e-15 85.1 117 43.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 4.9e-15 84.7 104 48.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.9e-15 84.7 108 45.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.4e-15 84.3 104 51.9
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 8.4e-15 84.0 110 46.4
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 8.4e-15 84.0 108 43.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.4e-14 83.2 97 46.4
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-14 82.8 95 46.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.9e-14 82.8 108 46.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.2e-14 82.0 99 47.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-14 81.6 96 46.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.4e-14 81.3 93 47.3
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.1e-14 80.9 108 44.4
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 89 47.2
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.6e-13 79.7 89 47.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.7e-13 79.0 81 56.8
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.7e-13 79.0 117 44.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 3.5e-13 78.6 101 41.6
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 4.6e-13 78.2 114 42.1
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 4.6e-13 78.2 108 43.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 4.6e-13 78.2 105 45.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 6.0e-13 77.8 117 44.4
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 6.0e-13 77.8 117 44.4
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.3e-12 76.6 107 43.0
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.3e-12 76.6 115 39.1
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.3e-12 75.9 114 43.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.3e-12 75.9 87 51.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.0e-12 75.5 86 48.8
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.0e-12 75.5 92 52.2
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 3.9e-12 75.1 95 49.5
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 5.1e-12 74.7 103 39.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.5e-11 73.2 87 49.4
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.5e-11 73.2 103 40.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 3.3e-11 72.0 92 46.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 4.3e-11 71.6 105 40.0
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 4.3e-11 71.6 100 47.0
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.6e-11 71.2 86 45.3
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 7.4e-11 70.9 104 40.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 9.6e-11 70.5 107 43.9
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 9.6e-11 70.5 85 52.9
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-10 70.1 90 41.1
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-10 69.7 62 59.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.1e-10 69.3 76 52.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.1e-10 69.3 93 43.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 2.1e-10 69.3 73 49.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.8e-10 68.2 98 39.8
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.1e-10 67.4 104 37.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.1e-09 67.0 87 43.7
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.1e-09 67.0 87 43.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.4e-09 65.9 103 40.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 9.0e-09 63.9 107 42.1
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.0e-08 62.8 86 44.2
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.6e-08 62.4 87 44.8
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.4e-08 62.0 96 38.5
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 4.5e-08 61.6 114 39.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.8e-08 61.2 79 45.6
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 7.6e-08 60.8 115 38.3
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 9.9e-08 60.5 116 40.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 9.9e-08 60.5 114 39.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-07 60.1 87 44.8
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.3e-07 60.1 61 52.5
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.7e-07 59.7 100 43.0
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.7e-07 59.7 116 37.9
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.7e-07 59.7 113 37.2
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.7e-07 59.7 116 37.9
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-07 59.7 87 44.8
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.2e-07 59.3 115 38.3
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 2.9e-07 58.9 114 38.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.9e-07 58.9 112 35.7
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.9e-07 58.9 112 35.7
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 3.8e-07 58.5 114 38.6
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 4.9e-07 58.2 117 37.6
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 8.4e-07 57.4 113 35.4
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 111 35.1
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-06 57.0 112 35.7
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.1e-06 57.0 113 34.5
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.1e-06 57.0 113 34.5
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.9e-06 56.2 70 42.9
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.9e-06 56.2 125 32.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.4e-06 55.8 114 35.1
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 2.4e-06 55.8 113 33.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.4e-06 55.8 124 33.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 5.5e-06 54.7 126 31.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 7.1e-06 54.3 114 33.3
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 9.3e-06 53.9 126 31.0


User provided reference genes

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