Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-165 585.5 303 100.0
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.4e-151 537.3 303 91.4
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.2e-77 291.2 362 56.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.0e-75 287.7 353 55.0
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 6.2e-73 278.5 333 56.8
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 9.9e-71 271.2 353 54.1
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.4e-70 268.5 364 53.0
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 8.3e-70 268.1 353 54.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.6e-65 253.8 345 50.4
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 9.9e-63 244.6 341 51.3
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 6.4e-62 241.9 326 52.1
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 8.4e-62 241.5 345 49.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 7.8e-60 235.0 308 50.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 8.7e-59 231.5 284 55.6
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 5.6e-58 228.8 352 47.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.1e-57 226.9 299 52.2
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.6e-57 226.1 317 47.9
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.1e-56 224.6 331 49.2
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 3.1e-56 223.0 310 51.0
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.4e-55 219.5 324 50.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.7e-54 217.2 331 46.5
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.9e-54 215.7 325 47.7
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.1e-53 214.5 341 45.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.4e-53 214.2 338 47.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.9e-53 213.8 308 48.7
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.2e-53 213.0 327 45.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 7.1e-53 211.8 303 47.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.6e-52 210.7 343 46.1
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.6e-52 209.1 339 44.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 4.6e-52 209.1 292 49.0
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.0e-51 208.0 350 46.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.0e-51 208.0 336 46.4
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.3e-51 206.8 327 46.5
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 5.1e-51 205.7 313 47.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 5.1e-51 205.7 364 45.6
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 8.7e-51 204.9 319 48.3
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-50 203.8 324 47.8
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-50 203.4 339 46.3
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.5e-50 203.4 326 46.3
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.3e-50 203.0 334 46.1
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 4.3e-50 202.6 333 43.5
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 5.6e-50 202.2 301 46.2
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.3e-50 201.8 331 43.8
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-49 201.1 339 46.0
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.8e-49 199.9 315 46.7
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.6e-49 199.5 305 45.9
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 8.1e-49 198.4 344 43.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.1e-48 196.4 306 47.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 4.0e-48 196.1 341 42.5
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 4.0e-48 196.1 338 44.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.5e-47 194.1 359 43.2
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.6e-47 193.4 315 45.1
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 2.6e-47 193.4 297 48.1
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-47 193.0 357 42.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.2e-46 190.3 336 44.3
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 4.9e-46 189.1 339 44.5
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 6.4e-46 188.7 291 46.4
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 6.4e-46 188.7 300 46.3
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.4e-45 187.6 328 43.3
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.9e-45 187.2 322 46.0
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.4e-45 186.8 338 42.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.2e-45 186.4 343 42.0
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.2e-45 186.4 348 43.7
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.2e-45 186.0 328 47.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-45 185.7 343 42.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 5.4e-45 185.7 323 44.9
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.2e-44 184.5 316 46.5
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.7e-44 183.3 385 40.0
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 3.5e-44 183.0 325 44.3
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.6e-44 182.6 339 44.0
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 4.6e-44 182.6 386 40.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 6.0e-44 182.2 315 43.2
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 7.9e-44 181.8 335 41.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-43 181.0 345 43.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.8e-43 180.6 333 41.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.9e-43 179.5 315 43.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 6.7e-43 178.7 334 42.2
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-42 177.9 332 42.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.1e-42 177.9 293 45.1
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.5e-42 177.6 333 42.9
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.5e-42 177.6 289 43.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-42 177.2 335 44.2
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.5e-42 176.8 330 42.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 3.3e-42 176.4 336 41.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-42 176.4 307 46.6
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 4.3e-42 176.0 214 52.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 5.6e-42 175.6 332 42.2
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.3e-41 174.5 371 39.6
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-41 174.1 342 41.5
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-41 174.1 342 41.5
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.6e-41 174.1 342 41.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.6e-41 174.1 328 43.6
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 4.8e-41 172.6 333 42.3
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.8e-41 172.6 335 42.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.8e-41 172.6 308 43.5
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.2e-41 172.2 350 41.4
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.2e-41 172.2 352 40.6
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-40 171.4 342 40.6
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-40 171.4 340 42.1
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.1e-40 169.9 347 42.9
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 4.0e-40 169.5 347 42.4
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 5.3e-40 169.1 396 39.9
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.3e-40 169.1 356 40.2
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 5.8e-39 165.6 303 42.9
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 9.9e-39 164.9 314 42.7
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.3e-38 164.5 332 41.3
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.7e-38 164.1 311 40.2
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.9e-38 162.5 277 44.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 3.2e-37 159.8 331 39.0
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 4.2e-37 159.5 331 40.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 9.3e-37 158.3 313 44.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.5e-36 156.4 300 42.0
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.5e-36 156.4 294 42.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 4.6e-36 156.0 256 44.1
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.9e-36 155.2 300 42.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 3.0e-35 153.3 287 39.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.3e-33 147.9 307 38.8
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-33 147.5 298 41.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.8e-33 146.7 325 38.2
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.7e-33 146.4 328 39.6
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.7e-33 146.4 280 43.2
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 4.8e-33 146.0 335 38.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-32 144.4 341 38.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.4e-32 144.4 327 38.2
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.0e-32 142.9 342 38.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.5e-31 141.0 295 41.4
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.9e-30 136.7 263 41.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.4e-29 134.4 294 39.8
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.5e-29 133.7 210 47.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.2e-29 133.3 256 42.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.2e-29 132.9 324 34.6
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.5e-28 129.8 155 53.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.3e-27 127.1 317 39.7
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 8.7e-27 125.2 300 37.0
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.7e-26 122.5 276 39.1
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-25 121.3 153 52.3
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.7e-25 119.8 148 48.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 8.2e-25 118.6 362 35.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.4e-24 117.1 248 36.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 4.5e-23 112.8 242 39.3
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.9e-23 112.5 250 38.8
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 5.9e-23 112.5 340 35.0
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.2e-22 110.5 287 36.2
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.0e-19 101.7 191 42.9
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.3e-19 100.5 150 46.7
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.3e-19 100.5 161 44.7
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.7e-18 95.9 300 37.0
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.7e-18 95.9 197 39.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 8.2e-17 92.0 365 33.7
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-15 88.2 256 37.1
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.5e-15 86.3 172 37.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.5e-13 80.5 111 48.6
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.2e-13 80.1 346 31.5
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.0e-10 70.9 150 36.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 7.4e-10 68.9 190 33.2
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 3.7e-09 66.6 62 59.7
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.3e-06 58.2 319 28.8
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.0e-06 56.2 86 41.9


User provided reference genes

Program Settings