Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.5e-183 644.4 459 100.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.5e-150 537.0 459 82.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 6.4e-130 468.4 463 73.0
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 7.0e-129 464.9 464 73.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.9e-122 443.0 461 73.1
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.4e-115 419.5 461 71.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.8e-98 362.8 255 72.5
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.8e-98 362.8 270 71.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.6e-96 357.5 444 61.0
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.5e-96 356.3 269 69.5
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 6.0e-96 355.5 268 68.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.9e-94 350.5 268 68.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 4.3e-94 349.4 267 68.9
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.6e-94 348.2 370 55.7
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 9.6e-94 348.2 351 56.4
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.6e-93 347.4 363 55.1
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.6e-93 347.4 371 58.8
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.8e-93 345.9 259 75.7
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 8.1e-93 345.1 246 77.2
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.1e-92 344.7 265 68.7
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.1e-92 344.7 257 67.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.4e-92 344.4 472 53.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-92 344.0 265 68.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.8e-92 344.0 270 71.1
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.8e-92 344.0 266 70.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.8e-92 344.0 263 67.7
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.4e-92 343.6 282 66.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.0e-92 342.8 255 69.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.0e-92 342.8 270 67.4
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 4.0e-92 342.8 248 71.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.3e-92 342.4 248 68.5
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 6.9e-92 342.0 248 68.5
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 6.9e-92 342.0 267 64.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 6.9e-92 342.0 267 64.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-91 340.5 265 67.9
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 2.6e-91 340.1 248 67.7
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.6e-91 340.1 246 76.8
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.4e-91 339.7 259 70.3
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.4e-91 339.7 239 72.4
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 4.5e-91 339.3 248 67.3
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 5.8e-91 339.0 241 72.2
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 5.8e-91 339.0 274 66.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 9.9e-91 338.2 257 65.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 9.9e-91 338.2 248 67.3
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 9.9e-91 338.2 259 67.6
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 9.9e-91 338.2 362 57.5
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.3e-90 337.8 264 67.4
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.7e-90 337.4 260 64.6
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.9e-90 336.7 242 71.9
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.9e-90 336.7 254 68.9
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.8e-90 336.3 267 65.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 8.4e-90 335.1 259 64.5
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 8.4e-90 335.1 249 66.3
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-89 334.7 285 64.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.4e-89 333.6 270 65.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.2e-89 332.8 325 60.6
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.2e-89 332.8 242 73.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 5.5e-89 332.4 238 73.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 9.3e-89 331.6 373 56.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.2e-88 331.3 258 65.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.2e-88 331.3 252 67.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.2e-88 331.3 251 67.3
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.6e-88 330.9 258 64.7
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 2.1e-88 330.5 258 64.7
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.1e-88 330.5 278 62.9
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.7e-88 330.1 272 65.8
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.7e-88 330.1 265 65.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 6.0e-88 328.9 263 65.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.0e-87 328.2 242 69.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.3e-87 327.0 273 68.1
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.3e-87 327.0 240 69.6
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.0e-87 326.6 365 57.3
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 3.0e-87 326.6 270 62.6
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 3.9e-87 326.2 243 70.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 5.1e-87 325.9 272 69.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.1e-87 325.9 250 64.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.1e-87 325.9 250 64.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 8.7e-87 325.1 266 62.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.9e-86 323.9 255 65.9
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.5e-86 323.6 264 64.8
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.4e-86 322.0 467 50.5
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 7.4e-86 322.0 367 54.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 9.6e-86 321.6 262 66.4
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 9.6e-86 321.6 267 62.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.3e-85 321.2 295 61.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.7e-85 319.7 243 70.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.4e-84 317.0 259 64.9
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 3.1e-84 316.6 267 65.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.0e-84 316.2 460 47.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 4.0e-84 316.2 258 64.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 6.9e-84 315.5 462 49.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 9.0e-84 315.1 270 63.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 9.0e-84 315.1 255 67.1
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.2e-83 314.7 236 67.8
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.5e-83 314.3 265 64.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-82 311.2 364 54.7
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.9e-82 310.1 464 50.0
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.5e-82 308.9 271 62.7
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 8.4e-82 308.5 241 65.6
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.1e-81 308.1 241 65.6
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.5e-81 307.0 271 61.3
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.6e-80 302.8 274 61.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 3.9e-79 299.7 246 64.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.3e-78 296.6 266 60.5
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 7.4e-78 295.4 230 64.8
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.3e-77 294.7 275 59.6
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-76 291.6 247 62.3
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.4e-76 291.2 242 60.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.5e-75 286.2 274 55.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 7.6e-75 285.4 213 69.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.7e-74 284.3 233 63.9
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.2e-74 283.9 231 62.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.9e-73 280.8 233 63.9
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.2e-72 278.1 272 56.6
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.0e-66 258.5 247 53.4
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.9e-66 256.9 255 57.3
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.2e-64 251.5 266 53.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 3.8e-58 229.9 254 47.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.3e-50 204.9 267 44.2
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.8e-47 192.2 504 41.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.8e-44 184.5 234 44.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.8e-44 184.5 248 43.5
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 4.5e-43 179.9 250 40.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.8e-39 167.9 228 39.5
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 7.0e-36 156.0 247 37.2
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 9.1e-36 155.6 112 68.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 8.6e-34 149.1 228 38.6
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 5.5e-33 146.4 122 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.3e-29 135.2 213 36.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.5e-27 127.1 219 33.3
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 5.9e-27 126.3 192 54.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 5.9e-27 126.3 87 67.8
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.3e-26 125.2 227 37.0
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 6.6e-26 122.9 215 30.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 3.4e-22 110.5 196 42.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 5.8e-22 109.8 147 40.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 7.5e-22 109.4 222 30.2
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 3.7e-21 107.1 236 29.7
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.9e-20 104.8 220 34.1
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.8e-15 88.2 126 44.4
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 2.6e-14 84.3 131 41.2
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 3.5e-11 73.9 67 52.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.0e-10 72.4 97 43.3
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 3.9e-10 70.5 233 28.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.9e-10 70.5 108 38.0
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 5.0e-10 70.1 58 55.2
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 6.6e-10 69.7 66 50.0
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.5e-09 68.6 186 31.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.5e-09 68.6 54 53.7
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 3.6e-08 63.9 84 41.7
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 4.7e-08 63.5 134 34.3
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 2.6e-06 57.8 54 51.9
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 9.9e-06 55.8 147 26.5


User provided reference genes

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