Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-91 340.1 179 100.0
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-88 328.9 180 97.8
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.8e-87 324.3 180 96.7
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.3e-75 286.6 190 84.2
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.3e-75 286.6 190 84.2
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.6e-71 272.3 185 80.0
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-64 250.0 180 79.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.3e-62 243.4 185 74.1
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.9e-62 242.3 178 75.8
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.6e-60 236.5 180 73.9
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.9e-60 234.2 183 71.6
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.0e-59 233.8 180 75.0
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.3e-59 232.6 180 75.6
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.0e-59 232.3 175 72.0
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 3.0e-59 232.3 185 69.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 3.0e-59 232.3 178 74.2
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.1e-58 230.3 182 73.1
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-58 230.3 191 64.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.1e-58 230.3 174 73.0
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.9e-58 229.6 175 70.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.5e-58 229.2 175 71.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.5e-58 229.2 181 71.8
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 4.3e-58 228.4 179 70.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.3e-58 228.4 186 69.4
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.7e-58 228.0 174 70.7
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 9.6e-58 227.3 171 73.7
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.1e-57 226.1 176 69.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.8e-57 225.7 176 71.6
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.8e-57 225.7 176 71.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 8.2e-57 224.2 179 70.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.1e-56 223.8 182 69.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.4e-56 222.6 179 69.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 9.0e-56 220.7 174 70.1
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 9.0e-56 220.7 180 69.4
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.2e-55 220.3 174 66.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.2e-55 220.3 198 61.6
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.2e-55 220.3 175 68.6
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 179 68.2
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 3.4e-55 218.8 174 69.5
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.2e-54 216.1 189 67.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.9e-54 215.7 174 67.2
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.9e-54 215.7 178 63.5
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.9e-54 215.7 177 70.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.0e-54 214.9 131 82.4
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 5.0e-54 214.9 178 66.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 6.5e-54 214.5 174 67.8
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 6.5e-54 214.5 179 68.2
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 8.4e-54 214.2 175 66.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.1e-53 213.8 175 68.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.4e-53 213.4 174 67.8
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-53 212.6 179 66.5
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-53 212.6 179 66.5
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.2e-53 212.2 179 65.9
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.2e-53 212.2 179 65.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.2e-53 212.2 204 61.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 4.2e-53 211.8 173 67.1
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 5.5e-53 211.5 188 63.3
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.7e-52 209.1 178 65.2
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.7e-52 209.1 177 66.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 67.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 67.0
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 3.5e-52 208.8 187 64.2
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 6.1e-52 208.0 178 62.4
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.9e-52 207.6 180 64.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.0e-51 207.2 181 66.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.3e-51 206.8 174 64.9
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.3e-51 206.8 175 65.7
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.3e-51 206.8 142 80.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.8e-51 206.5 187 62.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.3e-51 206.1 179 66.5
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.3e-51 206.1 176 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.0e-51 205.7 175 64.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.0e-51 205.7 180 65.0
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.9e-51 205.3 182 63.7
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.9e-51 205.3 200 60.5
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.9e-51 205.3 173 67.1
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 8.7e-51 204.1 179 64.2
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 8.7e-51 204.1 174 64.4
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 8.7e-51 204.1 179 64.8
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.1e-50 203.8 174 64.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.5e-50 203.4 175 66.3
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.9e-50 203.0 176 63.6
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.9e-50 203.0 176 64.8
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 64.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.9e-50 203.0 178 64.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 64.0
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.3e-50 202.2 176 61.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 7.4e-50 201.1 193 59.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.3e-49 200.3 176 62.5
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.3e-49 200.3 153 73.2
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 63.5
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.7e-49 198.7 178 61.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 4.8e-49 198.4 187 60.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-48 196.4 181 61.9
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.4e-48 196.1 176 64.2
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.1e-48 195.3 157 73.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 5.3e-48 194.9 184 62.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 176 62.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 176 62.5
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.6e-47 192.6 177 57.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.6e-47 192.6 178 62.4
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 5.9e-47 191.4 184 59.2
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.9e-47 191.4 133 75.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.0e-46 190.7 178 61.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-46 189.9 164 63.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.9e-46 189.1 173 60.7
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 4.2e-45 185.3 174 62.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 4.2e-45 185.3 174 62.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.2e-45 185.3 195 57.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.6e-44 183.3 120 76.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.1e-44 183.0 177 60.5
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 7.9e-44 181.0 176 59.1
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 8.8e-43 177.6 154 67.5
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.7e-41 173.3 172 58.1
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.4e-40 170.2 102 83.3
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.5e-39 166.8 134 64.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-38 162.9 176 56.8
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.6e-36 155.6 91 84.6
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.9e-35 152.1 188 47.3
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.1e-34 150.6 146 61.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.4e-34 148.7 188 47.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.8e-33 146.0 115 65.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.1e-32 142.1 102 68.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.1e-29 134.0 112 61.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.5e-29 132.9 103 64.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 9.4e-29 131.0 101 67.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 9.4e-29 131.0 124 64.5
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.1e-28 129.8 101 66.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.7e-28 128.6 125 56.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.3e-27 126.3 85 76.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.9e-27 125.6 120 55.0
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.5e-26 123.6 102 64.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 4.4e-26 122.1 103 63.1
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-23 113.6 110 52.7
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.5e-23 112.5 131 54.2
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.0e-22 110.9 103 55.3
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-22 110.5 88 72.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.7e-22 110.2 115 54.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 3.8e-22 109.0 103 57.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.5e-22 108.2 110 51.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.2e-21 105.9 111 53.2
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 9.4e-21 104.4 176 43.2
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.6e-20 102.4 82 61.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 5.2e-19 98.6 73 64.4
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.7e-18 95.1 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.8e-17 92.8 67 71.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.8e-17 92.0 90 51.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.3e-17 91.7 98 45.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 8.3e-17 91.3 103 49.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.4e-16 88.6 94 51.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 5.4e-16 88.6 123 48.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.3e-11 73.2 87 39.1
CAN.G1581.1 Capsicum annuum HOM05D004626 ORTHO05D005185 1.1e-08 64.3 56 71.4
Nitab4.5_0000104g0020 Nicotiana tabacum HOM05D034732 ORTHO05D285139 2.3e-06 56.6 54 64.8


User provided reference genes

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