Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000004g0130 Nicotiana tabacum HOM05D006523 ORTHO05D008212 5.8e-39 163.7 80 100.0
Peaxi162Scf00658g00085 Petunia axillaris HOM05D006523 ORTHO05D008212 8.2e-17 90.1 89 58.4
SalBow6G0031 Salvia bowleyana HOM05D006523 ORTHO05D008212 3.1e-16 88.2 93 52.7
Nitab4.5_0001655g0150 Nicotiana tabacum HOM05D006523 ORTHO05D008212 9.1e-16 86.7 93 54.8
Potri.010G202200 Populus trichocarpa HOM05D006523 ORTHO05D008212 1.0e-14 83.2 92 47.8
Nitab4.5_0001040g0050 Nicotiana tabacum HOM05D006523 ORTHO05D008212 1.3e-14 82.8 93 54.8
TAR633G0385 Trochodendron aralioides HOM05D006523 ORTHO05D008212 2.9e-14 81.6 93 49.5
MSTRG.278 Avicennia marina HOM05D006523 ORTHO05D008212 1.1e-13 79.7 90 48.9
CiPaw.01G289000 Carya illinoinensis HOM05D006523 ORTHO05D008212 3.2e-13 78.2 85 54.1
Lj1C939G12 Lonicera japonica HOM05D006523 ORTHO05D008212 4.2e-13 77.8 95 48.4
SGA_v2.0_scaffold221G42676 Striga asiatica HOM05D006523 ORTHO05D008212 4.2e-13 77.8 102 44.1
Ciclev10033366m.g Citrus clementina HOM05D006523 ORTHO05D008212 5.5e-13 77.4 83 51.8
QL08p059471 Quercus lobata HOM05D006523 ORTHO05D008212 5.5e-13 77.4 97 48.5
Haze_17085 Corylus avellana HOM05D006523 ORTHO05D008212 1.6e-12 75.9 87 50.6
FAN06G1109 Fragaria x ananassa HOM05D006523 ORTHO05D008212 2.7e-12 75.1 87 47.1
RcHm_v2.0_Chr1g0367871 Rosa chinensis HOM05D006523 ORTHO05D008212 2.7e-12 75.1 94 44.7
Cc02_g07640 Coffea canephora HOM05D006523 ORTHO05D008212 3.6e-12 74.7 93 47.3
Prupe.2G237400 Prunus persica HOM05D006523 ORTHO05D008212 4.7e-12 74.3 94 47.9
AUR62039361 Chenopodium quinoa HOM05D006523 ORTHO05D008212 6.1e-12 73.9 87 48.3
FvH4_7g22770 Fragaria vesca HOM05D006523 ORTHO05D008212 6.1e-12 73.9 93 45.2
FAN06G3404 Fragaria x ananassa HOM05D006523 ORTHO05D008212 6.1e-12 73.9 93 45.2
Aa31sc24G140 Aethionema arabicum HOM05D006523 ORTHO05D008212 8.0e-12 73.6 85 48.2
Cpa.g.sc1.423 Carica papaya HOM05D006523 ORTHO05D008212 8.0e-12 73.6 92 45.7
Lsat_1_v5_gn_2_118400 Lactuca sativa HOM05D006523 ORTHO05D008212 8.0e-12 73.6 82 48.8
Migut.F01454 Erythranthe guttata HOM05D006523 ORTHO05D008212 1.0e-11 73.2 89 46.1
Nn8g38773 Nelumbo nucifera HOM05D006523 ORTHO05D008212 1.0e-11 73.2 93 45.2
Sp6g30170 Schrenkiella parvula HOM05D006523 ORTHO05D008212 1.0e-11 73.2 88 47.7
Ah.16g102450 Amaranthus hybridus HOM05D006523 ORTHO05D008212 1.4e-11 72.8 90 48.9
FAN10G0859 Fragaria x ananassa HOM05D006523 ORTHO05D008212 1.4e-11 72.8 92 42.4
Phvul.008G232100 Phaseolus vulgaris HOM05D006523 ORTHO05D008212 1.4e-11 72.8 86 50.0
QL02p008420 Quercus lobata HOM05D006523 ORTHO05D008212 1.4e-11 72.8 93 49.5
Actinidia23669 Actinidia chinensis HOM05D006523 ORTHO05D008212 1.8e-11 72.4 95 45.3
ECA238G1917 Erigeron canadensis HOM05D006523 ORTHO05D008212 1.8e-11 72.4 95 44.2
TWI15G0822 Tripterygium wilfordii HOM05D006523 ORTHO05D008212 1.8e-11 72.4 93 47.3
COL.COLO4_15080 Corchorus olitorius HOM05D006523 ORTHO05D008212 2.3e-11 72.0 91 49.5
Dinv03705 Davidia involucrata HOM05D006523 ORTHO05D008212 2.3e-11 72.0 91 46.2
Dinv15863 Davidia involucrata HOM05D006523 ORTHO05D008212 2.3e-11 72.0 91 46.2
FAN01G0003 Fragaria x ananassa HOM05D006523 ORTHO05D008212 2.3e-11 72.0 93 44.1
FAN01G0853 Fragaria x ananassa HOM05D006523 ORTHO05D008212 2.3e-11 72.0 93 44.1
HanXRQChr07g0201431 Helianthus annuus HOM05D006523 ORTHO05D008212 2.3e-11 72.0 90 43.3
CSS0042327 Camellia sinensis var. sinensis HOM05D006523 ORTHO05D008212 3.0e-11 71.6 98 42.9
FAN03G0736 Fragaria x ananassa HOM05D006523 ORTHO05D008212 3.0e-11 71.6 93 43.0
Medtr5g080020 Medicago truncatula HOM05D006523 ORTHO05D008212 3.0e-11 71.6 93 44.1
EL10Ac2g04730 Beta vulgaris HOM05D006523 ORTHO05D008212 4.0e-11 71.2 88 50.0
A10p24510 Brassica napus HOM05D006523 ORTHO05D008212 4.0e-11 71.2 93 44.1
Duzib114G1044 Durio zibethinus HOM05D006523 ORTHO05D008212 4.0e-11 71.2 90 48.9
Carub.0006s1202 Capsella rubella HOM05D006523 ORTHO05D008212 6.7e-11 70.5 92 45.7
Gohir.D04G064000 Gossypium hirsutum HOM05D006523 ORTHO05D008212 6.7e-11 70.5 91 50.5
Oeu016465.1 Olea europaea HOM05D006523 ORTHO05D008212 6.7e-11 70.5 83 47.0
BraA10t44516Z Brassica rapa HOM05D006523 ORTHO05D008212 8.8e-11 70.1 93 43.0
CARHR199600 Cardamine hirsuta HOM05D006523 ORTHO05D008212 8.8e-11 70.1 90 43.3
Gohir.A05G348500 Gossypium hirsutum HOM05D006523 ORTHO05D008212 8.8e-11 70.1 91 50.5
Gorai.012G071600 Gossypium raimondii HOM05D006523 ORTHO05D008212 8.8e-11 70.1 91 50.5
MD07G1200600 Malus domestica HOM05D006523 ORTHO05D008212 8.8e-11 70.1 94 42.6
CANSAT56G0033 Cannabis sativa HOM05D006523 ORTHO05D008212 1.1e-10 69.7 92 48.9
CANSAT56G2206 Cannabis sativa HOM05D006523 ORTHO05D008212 1.1e-10 69.7 92 48.9
Manes.10G029100 Manihot esculenta HOM05D006523 ORTHO05D008212 1.1e-10 69.7 94 41.5
Aqoxy1G00906 Aquilegia oxysepala HOM05D006523 ORTHO05D008212 1.5e-10 69.3 93 45.2
Thhalv10014583m.g Eutrema salsugineum HOM05D006523 ORTHO05D008212 1.5e-10 69.3 92 43.5
VMungo0647G1953 Vigna mungo HOM05D006523 ORTHO05D008212 1.5e-10 69.3 86 47.7
ClCG09G019630 Citrullus lanatus HOM05D006523 ORTHO05D008212 2.0e-10 68.9 94 47.9
Hund16077 Selenicereus undatus HOM05D006523 ORTHO05D008212 2.0e-10 68.9 89 44.9
AT5G13830 Arabidopsis thaliana HOM05D006523 ORTHO05D008212 2.6e-10 68.6 91 46.2
CsaV3_5G026760 Cucumis sativus L. HOM05D006523 ORTHO05D008212 2.6e-10 68.6 94 47.9
Glyma.14G067900 Glycine max HOM05D006523 ORTHO05D008212 2.6e-10 68.6 79 51.9
PSO339G5561 Papaver somniferum HOM05D006523 ORTHO05D008212 2.6e-10 68.6 90 50.0
PSO513G0162 Papaver somniferum HOM05D006523 ORTHO05D008212 3.3e-10 68.2 89 48.3
TPR.G3462 Trifolium pratense HOM05D006523 ORTHO05D008212 3.3e-10 68.2 93 45.2
LjContig00141g0009707 Lotus japonicus HOM05D006523 ORTHO05D008212 4.4e-10 67.8 97 42.3
GSVIVG01016519001 Vitis vinifera HOM05D006523 ORTHO05D008212 4.4e-10 67.8 100 41.0
BcaC04g24249 Brassica carinata HOM05D006523 ORTHO05D008212 5.7e-10 67.4 93 43.0
unitig_61.g26158 Utricularia gibba HOM05D006523 ORTHO05D008212 5.7e-10 67.4 95 46.3
unitig_70.g32538 Utricularia gibba HOM05D006523 ORTHO05D008212 5.7e-10 67.4 95 46.3
AL6G24460 Arabidopsis lyrata HOM05D006523 ORTHO05D008212 7.5e-10 67.0 99 41.4
Lalb_Chr10g0104601 Lupinus albus HOM05D006523 ORTHO05D008212 7.5e-10 67.0 88 44.3
C09p63250 Brassica napus HOM05D006523 ORTHO05D008212 9.7e-10 66.6 93 43.0
BcaC04g19074 Brassica carinata HOM05D006523 ORTHO05D008212 1.3e-09 66.2 94 42.6
BolC9t59161H Brassica oleracea HOM05D006523 ORTHO05D008212 1.3e-09 66.2 94 42.6
PGR142G0925 Punica granatum HOM05D006523 ORTHO05D008212 1.3e-09 66.2 86 47.7
Ca_05884_v3 Cicer arietinum L. HOM05D006523 ORTHO05D008212 1.7e-09 65.9 92 43.5
Eucgr.G02942 Eucalyptus grandis HOM05D006523 ORTHO05D008212 2.2e-09 65.5 93 44.1
Sed0022265 Sechium edule HOM05D006523 ORTHO05D008212 2.8e-09 65.1 94 45.7
Thecc.10G036400 Theobroma cacao HOM05D006523 ORTHO05D008212 2.8e-09 65.1 92 50.0
MBI14_g12127_MAGBIO Magnolia biondii HOM05D006523 ORTHO05D008212 4.8e-09 64.3 92 43.5
THA.LOC104826739 Tarenaya hassleriana HOM05D006523 ORTHO05D008212 4.8e-09 64.3 96 39.6
arahy.Tifrunner.gnm1.ann1.PJ9UI9 Arachis hypogaea HOM05D006523 ORTHO05D008212 2.4e-08 62.0 97 42.3
arahy.Tifrunner.gnm1.ann1.KN5X6X Arachis hypogaea HOM05D006523 ORTHO05D008212 3.1e-08 61.6 97 43.3
Sabra10G0156100 Salix brachista HOM05D006523 ORTHO05D008212 3.1e-08 61.6 124 36.3
CDE07G1400 Ceratophyllum demersum HOM05D006523 ORTHO05D008212 4.1e-08 61.2 90 41.1
Mapoly0038s0066 Marchantia polymorpha HOM05D006523 ORTHO05D008212 5.3e-08 60.8 86 44.2
ATR0559G152 Amborella trichopoda HOM05D006523 ORTHO05D008212 1.6e-07 59.3 91 40.7
Os03g0822300 Oryza sativa ssp. japonica HOM05D006523 ORTHO05D008212 3.5e-07 58.2 94 39.4
Zm00001eb062790 Zea mays HOM05D006523 ORTHO05D008212 2.9e-06 55.1 94 37.2
Nitab4.5_0004559g0030 Nicotiana tabacum HOM05D006523 ORTHO05D008212 5.0e-06 54.3 28 89.3


User provided reference genes

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