Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.0e-218 760.4 399 100.0
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.6e-193 677.9 524 72.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 3.5e-177 625.2 474 73.4
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.5e-172 609.8 524 67.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.4e-170 603.2 533 67.4
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-170 602.4 533 67.0
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.5e-169 598.6 521 67.8
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 3.9e-152 542.0 525 60.2
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.7e-145 518.5 509 57.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.9e-144 515.4 481 61.3
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.7e-132 476.1 492 57.7
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.2e-120 435.3 410 58.5
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 9.8e-119 431.0 524 50.8
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.7e-116 422.9 525 49.7
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 5.9e-116 421.8 516 51.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 8.6e-115 417.9 518 49.0
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 7.5e-111 404.8 506 50.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.5e-111 404.8 489 49.1
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 7.5e-111 404.8 461 52.3
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 7.0e-109 398.3 525 49.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.5e-106 389.8 500 48.0
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 5.6e-106 388.7 547 46.1
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 9.5e-106 387.9 508 48.6
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.2e-105 387.5 513 46.8
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.3e-104 383.3 531 47.3
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.2e-104 382.1 500 48.0
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.3e-102 377.5 516 46.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.4e-101 374.0 524 47.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.1e-101 372.5 519 46.4
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 7.8e-100 368.2 508 46.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.3e-99 367.5 509 45.0
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.3e-99 367.5 516 45.9
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.9e-99 365.9 522 46.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-97 360.5 508 46.3
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.8e-97 359.8 520 44.0
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 4.7e-97 359.0 492 46.1
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 8.1e-97 358.2 520 42.9
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.4e-96 357.5 526 45.1
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.4e-96 357.5 517 45.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.3e-96 356.7 514 46.5
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.8e-96 355.1 526 45.1
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.2e-95 354.4 540 44.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-95 353.6 526 44.5
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.6e-95 353.2 507 45.0
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.4e-95 352.8 531 44.8
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 4.4e-95 352.4 516 44.6
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 7.6e-95 351.7 524 45.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 2.2e-94 350.1 525 44.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 6.4e-94 348.6 514 44.7
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.4e-93 346.7 513 42.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.4e-93 345.5 523 44.0
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.1e-93 345.1 527 43.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 7.1e-93 345.1 538 43.7
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.6e-92 344.0 522 45.0
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.0e-92 342.0 523 43.6
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 7.8e-92 341.7 506 43.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.6e-91 338.6 529 43.1
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 9.6e-90 334.7 274 65.3
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.6e-89 332.8 405 52.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 4.7e-89 332.4 502 45.4
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 8.1e-89 331.6 521 44.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.4e-87 326.2 598 39.5
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 5.8e-87 325.5 492 44.5
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 7.6e-87 325.1 519 43.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.2e-86 323.6 521 43.6
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.9e-86 322.4 491 46.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-85 321.2 528 42.8
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.1e-85 321.2 508 43.1
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.9e-85 320.5 489 44.6
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.2e-84 317.8 515 43.1
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 3.5e-84 316.2 508 42.1
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.0e-83 314.7 512 42.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.9e-83 312.8 519 42.6
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 8.7e-83 311.6 289 59.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.9e-82 310.5 512 42.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.8e-81 305.8 468 44.0
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 8.1e-81 305.1 527 41.9
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.8e-80 303.9 510 41.8
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.1e-80 303.1 522 42.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 9.0e-80 301.6 512 40.4
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.0e-79 300.4 519 41.8
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.7e-78 297.4 485 41.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 4.9e-78 295.8 511 41.5
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.4e-77 293.5 462 42.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 7.1e-77 292.0 493 41.4
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 4.6e-76 289.3 514 41.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 7.9e-76 288.5 499 41.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.7e-75 287.3 532 39.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 5.1e-75 285.8 526 38.8
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.5e-74 284.3 515 40.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.6e-73 280.8 520 39.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.1e-73 280.4 504 41.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.4e-72 277.7 517 40.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 9.0e-72 275.0 540 38.0
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.2e-71 274.6 535 39.1
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.0e-71 273.9 516 39.5
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.6e-71 273.5 529 38.6
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.4e-71 273.1 491 40.5
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 7.6e-71 271.9 521 37.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 9.9e-71 271.6 393 45.3
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-69 267.7 560 37.9
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 7.1e-69 265.4 218 65.6
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 6.0e-68 262.3 513 39.2
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.0e-67 261.5 499 38.9
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.8e-67 260.8 486 38.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.0e-67 260.0 505 39.0
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 5.1e-67 259.2 518 38.6
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.1e-66 258.1 496 37.7
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.5e-66 257.7 440 40.2
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.5e-66 257.7 496 37.7
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 9.6e-66 255.0 524 38.0
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.3e-65 254.6 522 36.8
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.1e-65 253.8 520 36.7
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.1e-65 253.8 520 36.7
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 4.8e-65 252.7 521 39.0
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 4.8e-65 252.7 530 37.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.2e-63 248.1 508 38.2
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.3e-62 244.6 494 38.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.2e-62 243.8 508 37.2
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 2.2e-62 243.8 499 37.5
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 3.2e-61 240.0 523 37.3
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.2e-61 240.0 523 37.5
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 5.5e-61 239.2 523 37.3
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.1e-60 237.3 521 35.5
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.3e-59 234.6 488 35.7
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.1e-56 223.4 472 37.9
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.9e-55 219.2 447 39.8
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.4e-54 215.3 440 39.1
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 5.5e-53 212.6 355 41.7
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.6e-52 209.5 504 36.1
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.3e-50 203.4 499 35.1
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 7.4e-50 202.2 362 39.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.8e-48 197.6 361 36.8
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 8.5e-46 188.7 361 39.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 5.5e-45 186.0 479 34.9
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-43 181.4 243 49.4
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 3.0e-43 180.3 444 33.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.3e-41 172.6 185 56.2
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.1e-40 171.8 369 34.7
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 5.0e-38 162.9 311 39.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.9e-37 161.0 546 30.2
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-29 135.2 274 38.0
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.7e-28 130.6 259 39.0
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.7e-28 130.6 387 28.4
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-27 127.9 185 45.4
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.3e-25 119.4 94 67.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 6.3e-25 119.4 427 27.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.4e-24 117.5 379 29.3
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 3.8e-22 110.2 456 27.6
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.0e-22 109.8 389 26.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.3e-19 100.9 387 26.4
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.8e-19 99.4 91 57.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.6e-18 97.4 387 26.4
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.3e-17 95.1 75 61.3
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 6.3e-17 92.8 110 50.0
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-16 91.7 95 53.7
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.4e-16 90.9 180 34.4
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 3.1e-16 90.5 117 45.3
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.0e-16 89.4 82 59.8
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-15 87.8 263 31.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.2e-14 84.3 76 59.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 3.8e-14 83.6 94 53.2
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 8.5e-14 82.4 397 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.1e-13 82.0 97 50.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 6.8e-11 72.8 92 50.0
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 8.8e-11 72.4 67 52.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.8e-09 67.4 97 47.4
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.8e-09 67.4 64 50.0
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.6e-07 61.6 33 90.9
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 2.0e-07 61.2 44 68.2
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 4.5e-07 60.1 46 69.6
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 4.5e-07 60.1 97 40.2


User provided reference genes

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