Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000002g0220 Nicotiana tabacum HOM05D000401 ORTHO05D000252 7.1e-102 374.0 198 100.0
Nitab4.5_0001868g0040 Nicotiana tabacum HOM05D000401 ORTHO05D000252 2.3e-52 209.5 159 73.6
Peaxi162Scf00239g00023 Petunia axillaris HOM05D000401 ORTHO05D000252 1.8e-49 199.9 185 68.1
Peaxi162Scf00390g00337 Petunia axillaris HOM05D000401 ORTHO05D000252 9.1e-33 144.4 205 50.2
PGSC0003DMG400030384 Solanum tuberosum HOM05D000401 ORTHO05D000252 7.7e-32 141.4 181 52.5
Dinv12271 Davidia involucrata HOM05D000401 ORTHO05D000252 1.0e-31 141.0 169 55.6
Sopen06g033840 Solanum pennellii HOM05D000401 ORTHO05D000252 1.7e-31 140.2 216 47.7
Solyc06g082460.1 Solanum lycopersicum HOM05D000401 ORTHO05D000252 1.1e-30 137.5 216 47.2
Oeu058243.1 Olea europaea HOM05D000401 ORTHO05D000252 2.6e-27 126.3 177 46.3
CAN.G3449.1 Capsicum annuum HOM05D000401 ORTHO05D000252 2.7e-24 116.3 221 38.9
GSVIVG01024579001 Vitis vinifera HOM05D000401 ORTHO05D000252 4.2e-22 109.0 192 41.7
Potri.013G155200 Populus trichocarpa HOM05D000401 ORTHO05D000252 1.6e-21 107.1 197 44.7
Sabra13G0125000 Salix brachista HOM05D000401 ORTHO05D000252 2.1e-21 106.7 197 43.1
Lsat_1_v5_gn_9_14101 Lactuca sativa HOM05D000401 ORTHO05D000252 4.4e-19 99.0 177 45.2
Cfa011818 Carpinus fangiana HOM05D000401 ORTHO05D000252 9.8e-19 97.8 188 43.6
Hma1.2p1_1637F.1_g294920 Hydrangea macrophylla HOM05D000401 ORTHO05D000252 9.8e-19 97.8 183 43.7
TAR623G1774 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.7e-18 97.1 192 42.7
COL.COLO4_11197 Corchorus olitorius HOM05D000401 ORTHO05D000252 2.2e-18 96.7 181 42.0
Haze_24454 Corylus avellana HOM05D000401 ORTHO05D000252 2.2e-18 96.7 188 43.6
Glyma.14G203600 Glycine max HOM05D000401 ORTHO05D000252 3.7e-18 95.9 183 41.0
Lj6g0003199 Lotus japonicus HOM05D000401 ORTHO05D000252 3.7e-18 95.9 161 46.0
Glyma.02G235600 Glycine max HOM05D000401 ORTHO05D000252 8.3e-18 94.7 190 40.0
LjContig00141g0026474 Lotus japonicus HOM05D000401 ORTHO05D000252 1.8e-17 93.6 169 42.6
CiPaw.13G065000 Carya illinoinensis HOM05D000401 ORTHO05D000252 2.4e-17 93.2 200 40.5
Potri.019G128500 Populus trichocarpa HOM05D000401 ORTHO05D000252 2.4e-17 93.2 197 40.1
MSTRG.12705 Avicennia marina HOM05D000401 ORTHO05D000252 3.1e-17 92.8 162 42.6
Dinv04838 Davidia involucrata HOM05D000401 ORTHO05D000252 3.1e-17 92.8 134 53.0
Cc01_g15220 Coffea canephora HOM05D000401 ORTHO05D000252 4.1e-17 92.4 207 38.6
RcHm_v2.0_Chr5g0072651 Rosa chinensis HOM05D000401 ORTHO05D000252 5.4e-17 92.0 187 40.6
Ca_05701_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 7.0e-17 91.7 164 40.9
Ca_30027_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 7.0e-17 91.7 164 40.9
Sabra19G0126100 Salix brachista HOM05D000401 ORTHO05D000252 9.1e-17 91.3 196 39.8
Rhsim13G0060700 Rhododendron simsii HOM05D000401 ORTHO05D000252 1.2e-16 90.9 177 43.5
TAR633G0869 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.2e-16 90.9 196 39.3
VMungo0647G0200 Vigna mungo HOM05D000401 ORTHO05D000252 1.2e-16 90.9 188 39.4
Phvul.008G248300 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.6e-16 90.5 188 39.4
Thecc.09G362400 Theobroma cacao HOM05D000401 ORTHO05D000252 1.6e-16 90.5 193 38.3
TWI79G0773 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 2.0e-16 90.1 161 39.1
TAR369G0195 Trochodendron aralioides HOM05D000401 ORTHO05D000252 5.9e-16 88.6 175 41.7
Lj2A1100T23 Lonicera japonica HOM05D000401 ORTHO05D000252 1.0e-15 87.8 150 46.7
Phvul.006G077000 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.3e-15 87.4 187 39.0
QL01p025102 Quercus lobata HOM05D000401 ORTHO05D000252 2.2e-15 86.7 113 46.0
VMungo0540G1589 Vigna mungo HOM05D000401 ORTHO05D000252 3.8e-15 85.9 186 39.8
TPR.G25743 Trifolium pratense HOM05D000401 ORTHO05D000252 8.5e-15 84.7 169 41.4
Phvul.008G084900 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.1e-14 84.3 182 35.7
Medtr5g075210 Medicago truncatula HOM05D000401 ORTHO05D000252 1.5e-14 84.0 169 41.4
Glyma.18G054200 Glycine max HOM05D000401 ORTHO05D000252 1.9e-14 83.6 190 38.4
Lalb_Chr15g0085931 Lupinus albus HOM05D000401 ORTHO05D000252 2.5e-14 83.2 166 42.8
MSTRG.17910 Avicennia marina HOM05D000401 ORTHO05D000252 3.2e-14 82.8 225 35.1
Prupe.6G042700 Prunus persica HOM05D000401 ORTHO05D000252 3.2e-14 82.8 212 35.8
Nn5g26877 Nelumbo nucifera HOM05D000401 ORTHO05D000252 4.2e-14 82.4 212 35.8
Sed0028103 Sechium edule HOM05D000401 ORTHO05D000252 5.5e-14 82.0 231 33.3
Manes.18G139400 Manihot esculenta HOM05D000401 ORTHO05D000252 7.2e-14 81.6 201 37.8
Thecc.04G154200 Theobroma cacao HOM05D000401 ORTHO05D000252 1.2e-13 80.9 201 33.3
Gohir.A13G235600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.1e-13 80.1 179 39.7
VMungo1383G3319 Vigna mungo HOM05D000401 ORTHO05D000252 2.1e-13 80.1 182 35.7
Sabra04G0151800 Salix brachista HOM05D000401 ORTHO05D000252 4.7e-13 79.0 215 34.4
FvH4_3g40310 Fragaria vesca HOM05D000401 ORTHO05D000252 6.1e-13 78.6 188 38.3
Lalb_Chr04g0251791 Lupinus albus HOM05D000401 ORTHO05D000252 6.1e-13 78.6 182 37.4
Actinidia23175 Actinidia chinensis HOM05D000401 ORTHO05D000252 8.0e-13 78.2 208 33.2
Glyma.11G159800 Glycine max HOM05D000401 ORTHO05D000252 8.0e-13 78.2 195 37.9
Nn2g10338 Nelumbo nucifera HOM05D000401 ORTHO05D000252 8.0e-13 78.2 211 33.2
CANSAT54G0863 Cannabis sativa HOM05D000401 ORTHO05D000252 1.0e-12 77.8 172 39.5
Lalb_Chr17g0345601 Lupinus albus HOM05D000401 ORTHO05D000252 1.0e-12 77.8 185 37.8
Manes.09G116400 Manihot esculenta HOM05D000401 ORTHO05D000252 1.0e-12 77.8 209 34.0
Gohir.D13G241300 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.8e-12 77.0 179 39.1
Gorai.013G272200 Gossypium raimondii HOM05D000401 ORTHO05D000252 1.8e-12 77.0 179 39.1
Hma1.2p1_0119F.1_g056880 Hydrangea macrophylla HOM05D000401 ORTHO05D000252 1.8e-12 77.0 199 40.2
CiPaw.10G164400 Carya illinoinensis HOM05D000401 ORTHO05D000252 3.0e-12 76.3 191 34.6
Psat2g052080 Pisum sativum HOM05D000401 ORTHO05D000252 4.0e-12 75.9 182 39.6
QL07p032580 Quercus lobata HOM05D000401 ORTHO05D000252 5.2e-12 75.5 203 31.0
Potri.006G107700 Populus trichocarpa HOM05D000401 ORTHO05D000252 8.8e-12 74.7 182 36.3
PSO384G4888 Papaver somniferum HOM05D000401 ORTHO05D000252 1.2e-11 74.3 194 34.5
SalBow2G3266 Salvia bowleyana HOM05D000401 ORTHO05D000252 1.2e-11 74.3 102 47.1
Gorai.011G129100 Gossypium raimondii HOM05D000401 ORTHO05D000252 1.5e-11 73.9 170 36.5
Gohir.D10G117200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.0e-11 73.6 170 36.5
Potri.016G134200 Populus trichocarpa HOM05D000401 ORTHO05D000252 2.0e-11 73.6 217 33.2
Duzib268G1597 Durio zibethinus HOM05D000401 ORTHO05D000252 7.5e-11 71.6 202 31.7
HanXRQChr08g0228411 Helianthus annuus HOM05D000401 ORTHO05D000252 7.5e-11 71.6 168 38.7
Atru.chr1.2520 Acer truncatum HOM05D000401 ORTHO05D000252 9.8e-11 71.2 186 34.4
Ciclev10003798m.g Citrus clementina HOM05D000401 ORTHO05D000252 9.8e-11 71.2 168 36.9
MD11G1055200 Malus domestica HOM05D000401 ORTHO05D000252 9.8e-11 71.2 158 34.8
Gohir.A10G149600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.3e-10 70.9 170 35.9
Atru.chr5.699 Acer truncatum HOM05D000401 ORTHO05D000252 2.2e-10 70.1 133 35.3
Lalb_Chr12g0207621 Lupinus albus HOM05D000401 ORTHO05D000252 2.2e-10 70.1 151 37.1
CDE06G1575 Ceratophyllum demersum HOM05D000401 ORTHO05D000252 3.7e-10 69.3 172 33.7
PSO339G2968 Papaver somniferum HOM05D000401 ORTHO05D000252 3.7e-10 69.3 198 34.8
VMungo0331G2036 Vigna mungo HOM05D000401 ORTHO05D000252 3.7e-10 69.3 148 37.8
Phvul.010G067800 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 4.9e-10 68.9 197 33.5
Gohir.A09G213646 Gossypium hirsutum HOM05D000401 ORTHO05D000252 8.3e-10 68.2 154 35.1
Gohir.D09G214200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 8.3e-10 68.2 154 35.1
Ciclev10011867m.g Citrus clementina HOM05D000401 ORTHO05D000252 1.1e-09 67.8 210 27.6
Duzib151G0166 Durio zibethinus HOM05D000401 ORTHO05D000252 1.1e-09 67.8 244 29.9
Duzib212G0735 Durio zibethinus HOM05D000401 ORTHO05D000252 1.8e-09 67.0 205 32.2
Ah.08g215470 Amaranthus hybridus HOM05D000401 ORTHO05D000252 2.4e-09 66.6 169 33.7
AL4G25270 Arabidopsis lyrata HOM05D000401 ORTHO05D000252 2.4e-09 66.6 200 34.0
arahy.Tifrunner.gnm1.ann1.PGK53K Arachis hypogaea HOM05D000401 ORTHO05D000252 2.4e-09 66.6 181 36.5
Gohir.D02G004600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.4e-09 66.6 180 33.3
Gorai.005G005200 Gossypium raimondii HOM05D000401 ORTHO05D000252 3.1e-09 66.2 180 33.3
CDE07G0491 Ceratophyllum demersum HOM05D000401 ORTHO05D000252 5.4e-09 65.5 172 33.7
arahy.Tifrunner.gnm1.ann1.5D5CHZ Arachis hypogaea HOM05D000401 ORTHO05D000252 7.0e-09 65.1 182 34.6
FAN21G2616 Fragaria x ananassa HOM05D000401 ORTHO05D000252 7.0e-09 65.1 178 38.2
AL136U10010 Arabidopsis lyrata HOM05D000401 ORTHO05D000252 2.7e-08 63.2 200 33.5
THA.LOC104800784 Tarenaya hassleriana HOM05D000401 ORTHO05D000252 3.5e-08 62.8 228 32.5
A05p15030 Brassica napus HOM05D000401 ORTHO05D000252 4.5e-08 62.4 100 42.0
FAN16G0556 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.5e-08 62.4 178 36.5
Lalb_Chr07g0190501 Lupinus albus HOM05D000401 ORTHO05D000252 4.5e-08 62.4 159 34.0
Manes.08G173700 Manihot esculenta HOM05D000401 ORTHO05D000252 4.5e-08 62.4 192 31.8
Sabra06G0083800 Salix brachista HOM05D000401 ORTHO05D000252 4.5e-08 62.4 152 36.2
CiPaw.09G219200 Carya illinoinensis HOM05D000401 ORTHO05D000252 7.7e-08 61.6 242 32.6
Cfa017057 Carpinus fangiana HOM05D000401 ORTHO05D000252 1.0e-07 61.2 224 31.2
Lj1g0008429 Lotus japonicus HOM05D000401 ORTHO05D000252 1.0e-07 61.2 240 31.2
BcaB02g10323 Brassica carinata HOM05D000401 ORTHO05D000252 1.3e-07 60.8 146 36.3
CiPaw.14G051600 Carya illinoinensis HOM05D000401 ORTHO05D000252 1.3e-07 60.8 107 39.3
C02p00040 Brassica napus HOM05D000401 ORTHO05D000252 1.7e-07 60.5 107 40.2
Glyma.09G276400 Glycine max HOM05D000401 ORTHO05D000252 1.7e-07 60.5 69 46.4
Sp4g12980 Schrenkiella parvula HOM05D000401 ORTHO05D000252 1.7e-07 60.5 139 36.7
Carub.0024s0020 Capsella rubella HOM05D000401 ORTHO05D000252 2.3e-07 60.1 69 42.0
Gorai.006G234600 Gossypium raimondii HOM05D000401 ORTHO05D000252 2.3e-07 60.1 156 32.7
Lj3g0000913 Lotus japonicus HOM05D000401 ORTHO05D000252 2.3e-07 60.1 68 45.6
MD03G1053600 Malus domestica HOM05D000401 ORTHO05D000252 2.3e-07 60.1 159 35.2
Sc21g0004850 Simmondsia chinensis HOM05D000401 ORTHO05D000252 2.3e-07 60.1 56 55.4
BcaC01g05994 Brassica carinata HOM05D000401 ORTHO05D000252 2.9e-07 59.7 131 35.9
BcaC02g11134 Brassica carinata HOM05D000401 ORTHO05D000252 2.9e-07 59.7 144 36.8
CSS0031257 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 2.9e-07 59.7 237 28.3
Atru.chr8.2381 Acer truncatum HOM05D000401 ORTHO05D000252 3.8e-07 59.3 118 35.6
C03p20040 Brassica napus HOM05D000401 ORTHO05D000252 5.0e-07 58.9 131 35.9
C04p20110 Brassica napus HOM05D000401 ORTHO05D000252 5.0e-07 58.9 144 36.1
BolC4t23550H Brassica oleracea HOM05D000401 ORTHO05D000252 5.0e-07 58.9 145 37.2
ATR0681G351 Amborella trichopoda HOM05D000401 ORTHO05D000252 6.6e-07 58.5 160 33.8
BolC3t14382H Brassica oleracea HOM05D000401 ORTHO05D000252 6.6e-07 58.5 131 35.9
CSS0002009 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 6.6e-07 58.5 237 27.0
Carub.0004s1156 Capsella rubella HOM05D000401 ORTHO05D000252 6.6e-07 58.5 98 38.8
FAN25G0123 Fragaria x ananassa HOM05D000401 ORTHO05D000252 6.6e-07 58.5 178 35.4
TPR.G4981 Trifolium pratense HOM05D000401 ORTHO05D000252 6.6e-07 58.5 97 37.1
A03p17000 Brassica napus HOM05D000401 ORTHO05D000252 8.6e-07 58.2 102 38.2
AUR62036217 Chenopodium quinoa HOM05D000401 ORTHO05D000252 8.6e-07 58.2 207 30.9
Gohir.A02G004200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.1e-06 57.8 180 32.8
Sp6g41080 Schrenkiella parvula HOM05D000401 ORTHO05D000252 1.9e-06 57.0 138 31.9
Migut.N00742 Erythranthe guttata HOM05D000401 ORTHO05D000252 3.3e-06 56.2 135 36.3
TWI77G0627 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 3.3e-06 56.2 198 29.3
AUR62009729 Chenopodium quinoa HOM05D000401 ORTHO05D000252 4.3e-06 55.8 164 34.1
Sp6g20020 Schrenkiella parvula HOM05D000401 ORTHO05D000252 4.3e-06 55.8 111 33.3
BcaB06g28365 Brassica carinata HOM05D000401 ORTHO05D000252 5.6e-06 55.5 108 41.7
Prupe.6G290900 Prunus persica HOM05D000401 ORTHO05D000252 5.6e-06 55.5 132 28.8
BcaB05g21907 Brassica carinata HOM05D000401 ORTHO05D000252 9.5e-06 54.7 78 42.3
Thhalv10017964m.g Eutrema salsugineum HOM05D000401 ORTHO05D000252 9.5e-06 54.7 202 32.7
Glyma.18G215300 Glycine max HOM05D000401 ORTHO05D000252 9.5e-06 54.7 180 31.7


User provided reference genes

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