Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.6e-109 399.4 201 100.0
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.4e-97 359.0 206 93.2
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 9.7e-75 283.9 189 81.0
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 4.2e-70 268.5 187 76.5
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 4.0e-68 261.9 187 74.3
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 3.4e-67 258.8 187 73.3
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 3.6e-61 238.8 191 69.6
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 6.1e-61 238.0 191 68.6
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 7.5e-59 231.1 177 70.6
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 9.8e-59 230.7 182 69.8
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.6e-53 213.4 192 65.1
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 1.0e-52 210.7 157 73.9
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 2.3e-52 209.5 177 62.1
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 2.0e-51 206.5 185 61.1
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.2e-50 203.0 171 62.0
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 3.7e-50 202.2 189 59.8
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 5.4e-49 198.4 188 56.9
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 7.0e-49 198.0 181 58.0
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 1.6e-48 196.8 184 57.1
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 2.7e-48 196.1 185 56.2
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 1.0e-47 194.1 178 56.7
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 8.6e-47 191.0 185 56.2
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 3.3e-46 189.1 178 59.0
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 3.3e-46 189.1 186 58.1
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 9.5e-46 187.6 182 56.0
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 5.2e-44 181.8 182 55.5
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 6.8e-44 181.4 181 53.6
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 2.0e-43 179.9 184 52.2
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 4.4e-43 178.7 109 81.7
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.2e-42 176.4 201 50.2
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.9e-42 176.0 185 51.4
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 2.9e-42 176.0 173 53.8
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 6.4e-42 174.9 187 56.7
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 6.4e-42 174.9 187 53.5
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 1.4e-41 173.7 169 55.0
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 4.1e-41 172.2 190 52.1
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 5.4e-41 171.8 109 75.2
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 5.4e-41 171.8 180 55.0
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 9.2e-41 171.0 190 53.7
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 1.6e-40 170.2 109 73.4
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 1.6e-40 170.2 187 52.4
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 1.6e-40 170.2 190 54.2
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 2.1e-40 169.9 183 51.9
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.1e-40 169.9 179 55.3
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 3.5e-40 169.1 179 51.4
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 4.6e-40 168.7 175 52.0
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 6.0e-40 168.3 180 52.2
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 7.8e-40 167.9 190 52.1
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 1.0e-39 167.5 186 50.5
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 6.6e-39 164.9 205 47.8
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 1.5e-38 163.7 184 49.5
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 1.9e-38 163.3 114 68.4
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 3.3e-38 162.5 192 47.9
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 1.2e-37 160.6 174 52.3
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 2.1e-37 159.8 246 40.7
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 2.1e-37 159.8 210 48.6
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.6e-37 159.1 158 54.4
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 4.7e-37 158.7 158 54.4
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 6.2e-37 158.3 181 53.6
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 8.1e-37 157.9 158 54.4
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.1e-36 157.5 119 66.4
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 1.8e-36 156.8 181 51.4
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 1.2e-35 154.1 121 62.8
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 5.8e-35 151.8 111 67.6
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 9.9e-35 151.0 180 48.3
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 1.3e-34 150.6 110 65.5
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 2.2e-34 149.8 177 50.3
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 2.2e-34 149.8 180 50.0
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 2.9e-34 149.4 107 69.2
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 3.7e-34 149.1 112 67.9
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 1.1e-33 147.5 186 47.8
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 1.4e-33 147.1 105 70.5
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 1.9e-33 146.7 106 67.0
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 3.2e-33 146.0 107 67.3
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 4.1e-33 145.6 249 37.3
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 1.6e-32 143.7 177 49.2
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 1.6e-32 143.7 104 68.3
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 3.5e-32 142.5 107 64.5
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.3e-31 140.6 193 46.6
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 1.3e-31 140.6 89 77.5
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 8.6e-31 137.9 196 45.4
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.1e-30 137.5 193 45.6
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.9e-30 136.7 205 43.4
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.5e-30 136.3 129 58.9
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.5e-30 136.3 129 58.9
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 4.3e-30 135.6 114 63.2
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 9.5e-30 134.4 202 44.6
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 9.5e-30 134.4 206 45.1
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 1.2e-29 134.0 114 63.2
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 2.1e-29 133.3 199 43.7
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 3.6e-29 132.5 87 73.6
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 4.7e-29 132.1 202 44.1
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 8.1e-29 131.3 204 43.6
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 8.1e-29 131.3 110 61.8
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 1.1e-28 131.0 195 41.0
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 1.1e-28 131.0 202 43.6
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.8e-28 130.2 195 41.0
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 2.4e-28 129.8 201 43.3
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 3.1e-28 129.4 213 38.0
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 6.8e-28 128.3 204 43.1
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 6.8e-28 128.3 173 46.8
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 1.5e-27 127.1 202 42.6
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 2.6e-27 126.3 202 40.1
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.6e-27 126.3 130 52.3
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 3.4e-27 125.9 185 41.6
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 7.6e-27 124.8 204 43.1
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 1.7e-26 123.6 195 43.1
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 2.2e-26 123.2 195 43.1
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 1.1e-25 120.9 101 56.4
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 3.2e-25 119.4 127 51.2
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.6e-24 117.1 202 41.6
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 2.1e-24 116.7 65 81.5
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 1.3e-23 114.0 204 37.7
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 1.1e-22 110.9 265 34.0
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 2.5e-22 109.8 184 39.7
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.2e-21 107.5 179 40.2
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.2e-21 107.5 170 41.8
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 2.4e-20 103.2 71 63.4
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 3.1e-20 102.8 188 38.8
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.5e-19 100.5 186 35.5
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.5e-19 100.5 201 36.3
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 5.8e-19 98.6 187 38.0
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 7.6e-19 98.2 196 36.7
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 3.2e-17 92.8 65 61.5
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 4.2e-17 92.4 170 36.5
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 2.1e-16 90.1 65 60.0
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 2.1e-16 90.1 65 60.0
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 2.1e-16 90.1 65 60.0
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 2.1e-16 90.1 65 60.0
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 2.7e-16 89.7 69 59.4
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 4.6e-16 89.0 172 37.2
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 2.7e-08 63.2 63 42.9
CARHR123780 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.3e-07 60.8 166 34.9


User provided reference genes

Program Settings