Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00963 Erythranthe guttata HOM05D001228 ORTHO05D003869 1.7e-45 185.7 92 100.0
Oeu026970.1 Olea europaea HOM05D001228 ORTHO05D003869 6.8e-23 110.5 94 63.8
SGA_v2.0_scaffold240G44063 Striga asiatica HOM05D001228 ORTHO05D003869 4.4e-22 107.8 92 63.0
Dinv12182 Davidia involucrata HOM05D001228 ORTHO05D003869 1.7e-21 105.9 98 57.1
Oeu057642.1 Olea europaea HOM05D001228 ORTHO05D003869 1.7e-21 105.9 94 61.7
Prupe.6G285900 Prunus persica HOM05D001228 ORTHO05D003869 1.8e-20 102.4 78 67.9
Nitab4.5_0003850g0040 Nicotiana tabacum HOM05D001228 ORTHO05D003869 2.4e-20 102.1 78 66.7
CiPaw.10G161500 Carya illinoinensis HOM05D001228 ORTHO05D003869 3.1e-20 101.7 96 55.2
Peaxi162Scf00264g00838 Petunia axillaris HOM05D001228 ORTHO05D003869 9.1e-20 100.1 87 59.8
SGA_v2.0_scaffold110G31183 Striga asiatica HOM05D001228 ORTHO05D003869 1.2e-19 99.8 92 54.3
Nitab4.5_0001226g0040 Nicotiana tabacum HOM05D001228 ORTHO05D003869 1.6e-19 99.4 92 55.4
Nitab4.5_0000047g0150 Nicotiana tabacum HOM05D001228 ORTHO05D003869 4.5e-19 97.8 92 54.3
ClCG10G022510 Citrullus lanatus HOM05D001228 ORTHO05D003869 5.9e-19 97.4 92 53.3
COL.COLO4_14441 Corchorus olitorius HOM05D001228 ORTHO05D003869 5.9e-19 97.4 95 56.8
Lj2A66T65 Lonicera japonica HOM05D001228 ORTHO05D003869 1.0e-18 96.7 92 52.2
RcHm_v2.0_Chr3g0461491 Rosa chinensis HOM05D001228 ORTHO05D003869 1.0e-18 96.7 81 60.5
vmacro08917 Vaccinium macrocarpon HOM05D001228 ORTHO05D003869 1.0e-18 96.7 77 63.6
Haze_21094 Corylus avellana HOM05D001228 ORTHO05D003869 2.2e-18 95.5 93 54.8
Lalb_Chr01g0023441 Lupinus albus HOM05D001228 ORTHO05D003869 2.2e-18 95.5 91 50.5
Thecc.05G005700 Theobroma cacao HOM05D001228 ORTHO05D003869 2.2e-18 95.5 92 56.5
Ciclev10012823m.g Citrus clementina HOM05D001228 ORTHO05D003869 2.9e-18 95.1 70 65.7
Cfa017105 Carpinus fangiana HOM05D001228 ORTHO05D003869 5.0e-18 94.4 94 53.2
QL07p033687 Quercus lobata HOM05D001228 ORTHO05D003869 5.0e-18 94.4 85 57.6
MELO3C009126.2 Cucumis melo HOM05D001228 ORTHO05D003869 6.5e-18 94.0 93 53.8
FAN02G1495 Fragaria x ananassa HOM05D001228 ORTHO05D003869 6.5e-18 94.0 81 56.8
Nitab4.5_0000355g0220 Nicotiana tabacum HOM05D001228 ORTHO05D003869 6.5e-18 94.0 82 58.5
Rhsim04G0124100 Rhododendron simsii HOM05D001228 ORTHO05D003869 6.5e-18 94.0 92 54.3
TWI77G0871 Tripterygium wilfordii HOM05D001228 ORTHO05D003869 6.5e-18 94.0 75 61.3
Duzib128G1021 Durio zibethinus HOM05D001228 ORTHO05D003869 1.1e-17 93.2 92 56.5
Lalb_Chr19g0124121 Lupinus albus HOM05D001228 ORTHO05D003869 1.1e-17 93.2 79 57.0
VMungo1383G0475 Vigna mungo HOM05D001228 ORTHO05D003869 1.1e-17 93.2 92 50.0
SalBow4G1866 Salvia bowleyana HOM05D001228 ORTHO05D003869 1.5e-17 92.8 92 58.7
CsaV3_3G033340 Cucumis sativus L. HOM05D001228 ORTHO05D003869 1.9e-17 92.4 92 48.9
TAR623G1791 Trochodendron aralioides HOM05D001228 ORTHO05D003869 2.5e-17 92.0 88 56.8
Actinidia11545 Actinidia chinensis HOM05D001228 ORTHO05D003869 3.2e-17 91.7 88 56.8
Atru.chr8.2349 Acer truncatum HOM05D001228 ORTHO05D003869 4.2e-17 91.3 95 53.7
TWI74G0137 Tripterygium wilfordii HOM05D001228 ORTHO05D003869 4.2e-17 91.3 76 57.9
Potri.016G128200 Populus trichocarpa HOM05D001228 ORTHO05D003869 7.2e-17 90.5 58 69.0
Medtr7g071110 Medicago truncatula HOM05D001228 ORTHO05D003869 9.5e-17 90.1 95 50.5
TPR.G18651 Trifolium pratense HOM05D001228 ORTHO05D003869 1.2e-16 89.7 74 54.1
CANSAT35G0968 Cannabis sativa HOM05D001228 ORTHO05D003869 1.6e-16 89.4 92 50.0
FvH4_6g10520 Fragaria vesca HOM05D001228 ORTHO05D003869 1.6e-16 89.4 74 59.5
FAN14G4900 Fragaria x ananassa HOM05D001228 ORTHO05D003869 1.6e-16 89.4 74 59.5
Lj3A945G16 Lonicera japonica HOM05D001228 ORTHO05D003869 2.1e-16 89.0 85 57.6
FAN05G2526 Fragaria x ananassa HOM05D001228 ORTHO05D003869 3.6e-16 88.2 77 55.8
FAN09G3644 Fragaria x ananassa HOM05D001228 ORTHO05D003869 3.6e-16 88.2 74 58.1
MBI15_g01645_MAGBIO Magnolia biondii HOM05D001228 ORTHO05D003869 3.6e-16 88.2 76 53.9
Glyma.09G280300 Glycine max HOM05D001228 ORTHO05D003869 6.1e-16 87.4 92 48.9
PGSC0003DMG400011859 Solanum tuberosum HOM05D001228 ORTHO05D003869 6.1e-16 87.4 85 54.1
FAN05G0078 Fragaria x ananassa HOM05D001228 ORTHO05D003869 8.0e-16 87.0 74 56.8
Glyma.18G208700 Glycine max HOM05D001228 ORTHO05D003869 8.0e-16 87.0 57 63.2
MD04G1167600 Malus domestica HOM05D001228 ORTHO05D003869 8.0e-16 87.0 96 51.0
MD12G1180900 Malus domestica HOM05D001228 ORTHO05D003869 8.0e-16 87.0 101 49.5
Psat3g123520 Pisum sativum HOM05D001228 ORTHO05D003869 8.0e-16 87.0 93 48.4
Solyc09g014993.1 Solanum lycopersicum HOM05D001228 ORTHO05D003869 8.0e-16 87.0 88 47.7
Solyc10g076300.2 Solanum lycopersicum HOM05D001228 ORTHO05D003869 8.0e-16 87.0 84 53.6
Sopen10g027920 Solanum pennellii HOM05D001228 ORTHO05D003869 8.0e-16 87.0 84 53.6
Manes.09G112600 Manihot esculenta HOM05D001228 ORTHO05D003869 1.0e-15 86.7 81 50.6
PGSC0003DMG400011620 Solanum tuberosum HOM05D001228 ORTHO05D003869 1.0e-15 86.7 96 45.8
Duzib093G0175 Durio zibethinus HOM05D001228 ORTHO05D003869 1.4e-15 86.3 92 54.3
Lj1g0006910 Lotus japonicus HOM05D001228 ORTHO05D003869 1.8e-15 85.9 91 45.1
CSS0038681 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 2.3e-15 85.5 74 60.8
Lalb_Chr12g0207431 Lupinus albus HOM05D001228 ORTHO05D003869 2.3e-15 85.5 71 56.3
Sopen09g007980 Solanum pennellii HOM05D001228 ORTHO05D003869 2.3e-15 85.5 92 45.7
Ah.08g209980 Amaranthus hybridus HOM05D001228 ORTHO05D003869 3.0e-15 85.1 67 56.7
Gohir.A04G095900 Gossypium hirsutum HOM05D001228 ORTHO05D003869 3.0e-15 85.1 93 52.7
Gorai.012G119500 Gossypium raimondii HOM05D001228 ORTHO05D003869 3.0e-15 85.1 93 52.7
Sabra16G0130200 Salix brachista HOM05D001228 ORTHO05D003869 3.0e-15 85.1 87 50.6
Lalb_Chr12g0207401 Lupinus albus HOM05D001228 ORTHO05D003869 6.8e-15 84.0 71 54.9
Eucgr.A00628 Eucalyptus grandis HOM05D001228 ORTHO05D003869 8.8e-15 83.6 54 66.7
Gohir.D04G135700 Gossypium hirsutum HOM05D001228 ORTHO05D003869 8.8e-15 83.6 93 52.7
arahy.Tifrunner.gnm1.ann1.998PHG Arachis hypogaea HOM05D001228 ORTHO05D003869 1.2e-14 83.2 95 41.1
CSS0036405 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 1.2e-14 83.2 74 59.5
Nn2g13279 Nelumbo nucifera HOM05D001228 ORTHO05D003869 1.5e-14 82.8 75 54.7
Sed0022013 Sechium edule HOM05D001228 ORTHO05D003869 1.5e-14 82.8 92 48.9
Actinidia20773 Actinidia chinensis HOM05D001228 ORTHO05D003869 2.0e-14 82.4 93 53.8
Hund03804 Selenicereus undatus HOM05D001228 ORTHO05D003869 2.6e-14 82.0 84 47.6
Thecc.05G005800 Theobroma cacao HOM05D001228 ORTHO05D003869 2.6e-14 82.0 95 53.7
GSVIVG01030259001 Vitis vinifera HOM05D001228 ORTHO05D003869 2.6e-14 82.0 96 46.9
MSTRG.18970 Avicennia marina HOM05D001228 ORTHO05D003869 3.4e-14 81.6 81 51.9
Hma1.2p1_0479F.1_g161710 Hydrangea macrophylla HOM05D001228 ORTHO05D003869 3.4e-14 81.6 58 67.2
Phvul.008G090400 Phaseolus vulgaris HOM05D001228 ORTHO05D003869 3.4e-14 81.6 93 47.3
arahy.Tifrunner.gnm1.ann1.PP06PB Arachis hypogaea HOM05D001228 ORTHO05D003869 4.4e-14 81.3 95 41.1
unitig_27.g24875 Utricularia gibba HOM05D001228 ORTHO05D003869 4.4e-14 81.3 87 48.3
MSTRG.5536 Avicennia marina HOM05D001228 ORTHO05D003869 7.5e-14 80.5 93 48.4
Ca_07712_v3 Cicer arietinum L. HOM05D001228 ORTHO05D003869 7.5e-14 80.5 55 63.6
Lalb_Chr03g0043581 Lupinus albus HOM05D001228 ORTHO05D003869 7.5e-14 80.5 79 48.1
Actinidia32547 Actinidia chinensis HOM05D001228 ORTHO05D003869 9.8e-14 80.1 64 56.2
DCAR_018663 Daucus carota HOM05D001228 ORTHO05D003869 9.8e-14 80.1 94 45.7
Cc00_g13880 Coffea canephora HOM05D001228 ORTHO05D003869 1.3e-13 79.7 91 51.6
PSO384G2232 Papaver somniferum HOM05D001228 ORTHO05D003869 1.7e-13 79.3 81 46.9
Aqoxy4G02713 Aquilegia oxysepala HOM05D001228 ORTHO05D003869 2.2e-13 79.0 90 50.0
PSO339G6233 Papaver somniferum HOM05D001228 ORTHO05D003869 2.2e-13 79.0 77 49.4
ECA236G4070 Erigeron canadensis HOM05D001410 ORTHO05D003969 3.7e-13 78.2 80 50.0
Peaxi162Scf00744g00227 Petunia axillaris HOM05D001228 ORTHO05D003869 3.7e-13 78.2 82 52.4
PGR031G3439 Punica granatum HOM05D001228 ORTHO05D003869 3.7e-13 78.2 91 45.1
arahy.Tifrunner.gnm1.ann1.22MEII Arachis hypogaea HOM05D001228 ORTHO05D003869 4.9e-13 77.8 59 52.5
HanXRQChr16g0509781 Helianthus annuus HOM05D001228 ORTHO05D003869 8.3e-13 77.0 56 58.9
Cpa.g.sc5.247 Carica papaya HOM05D001228 ORTHO05D003869 1.1e-12 76.6 92 51.1
Gohir.A01G230132 Gossypium hirsutum HOM05D001228 ORTHO05D003869 1.1e-12 76.6 79 51.9
Lsat_1_v5_gn_8_103660 Lactuca sativa HOM05D001228 ORTHO05D003869 1.1e-12 76.6 56 58.9
unitig_699.g19375 Utricularia gibba HOM05D001228 ORTHO05D003869 1.1e-12 76.6 86 48.8
Gohir.D01G220101 Gossypium hirsutum HOM05D001228 ORTHO05D003869 3.1e-12 75.1 79 51.9
ATR0594G080 Amborella trichopoda HOM05D001228 ORTHO05D003869 5.4e-12 74.3 88 42.0
Gorai.002G266800 Gossypium raimondii HOM05D001228 ORTHO05D003869 5.4e-12 74.3 79 50.6
BcaB06g29055 Brassica carinata HOM05D001228 ORTHO05D003869 7.0e-12 73.9 92 46.7
PGR102G2509 Punica granatum HOM05D001228 ORTHO05D003869 7.0e-12 73.9 95 43.2
Aa31sc114G80 Aethionema arabicum HOM05D001228 ORTHO05D003869 1.2e-11 73.2 73 52.1
BcaC02g07462 Brassica carinata HOM05D001228 ORTHO05D003869 1.6e-11 72.8 95 48.4
C04p66720 Brassica napus HOM05D001228 ORTHO05D003869 1.6e-11 72.8 95 48.4
BolC4t28174H Brassica oleracea HOM05D001228 ORTHO05D003869 1.6e-11 72.8 95 48.4
TPR.G5191 Trifolium pratense HOM05D001228 ORTHO05D003869 1.6e-11 72.8 86 44.2
Psat7g249480 Pisum sativum HOM05D001228 ORTHO05D003869 2.0e-11 72.4 50 60.0
Thhalv10017282m.g Eutrema salsugineum HOM05D001228 ORTHO05D003869 2.7e-11 72.0 92 48.9
Zm00001eb286320 Zea mays HOM05D001228 ORTHO05D003869 2.7e-11 72.0 82 42.7
BraA04t18410Z Brassica rapa HOM05D001228 ORTHO05D003869 3.5e-11 71.6 95 47.4
Phvul.010G062800 Phaseolus vulgaris HOM05D001228 ORTHO05D003869 3.5e-11 71.6 58 48.3
THA.LOC104823359 Tarenaya hassleriana HOM05D001228 ORTHO05D003869 3.5e-11 71.6 50 66.0
Sp4g20810 Schrenkiella parvula HOM05D001228 ORTHO05D003869 4.5e-11 71.2 95 44.2
A04p29430 Brassica napus HOM05D001228 ORTHO05D003869 5.9e-11 70.9 95 47.4
Carub.0004s2046 Capsella rubella HOM05D001228 ORTHO05D003869 5.9e-11 70.9 94 48.9
CARHR133170 Cardamine hirsuta HOM05D001228 ORTHO05D003869 5.9e-11 70.9 92 46.7
Os05g0344400 Oryza sativa ssp. japonica HOM05D001228 ORTHO05D003869 5.9e-11 70.9 55 49.1
HPP92_001132 Vanilla planifolia HOM05D001228 ORTHO05D003869 5.9e-11 70.9 92 39.1
COL.COLO4_30298 Corchorus olitorius HOM05D001228 ORTHO05D003869 1.0e-10 70.1 48 64.6
Lj3g0022456 Lotus japonicus HOM05D001228 ORTHO05D003869 1.0e-10 70.1 50 58.0
Lj3g0017137 Lotus japonicus HOM05D001228 ORTHO05D003869 1.3e-10 69.7 57 52.6
AT2G38480 Arabidopsis thaliana HOM05D001228 ORTHO05D003869 1.7e-10 69.3 75 48.0
AL4G35760 Arabidopsis lyrata HOM05D001228 ORTHO05D003869 2.3e-10 68.9 94 43.6
Eucgr.K02941 Eucalyptus grandis HOM05D001228 ORTHO05D003869 5.0e-10 67.8 96 43.8
BcaC02g07463 Brassica carinata HOM05D001228 ORTHO05D003869 6.6e-10 67.4 95 48.4
Glyma.01G128000 Glycine max HOM05D001228 ORTHO05D003869 6.6e-10 67.4 57 47.4
Aa31LG5G23870 Aethionema arabicum HOM05D001228 ORTHO05D003869 8.6e-10 67.0 92 42.4
CDE06G0538 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 8.6e-10 67.0 93 38.7
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 8.6e-10 67.0 48 60.4
Rhsim04G0124200 Rhododendron simsii HOM05D001228 ORTHO05D003869 8.6e-10 67.0 94 44.7
Prupe.6G285800 Prunus persica HOM05D001228 ORTHO05D003869 1.1e-09 66.6 105 41.9
A03p21340 Brassica napus HOM05D001228 ORTHO05D003869 1.5e-09 66.2 73 46.6
BraA03t11369Z Brassica rapa HOM05D001228 ORTHO05D003869 1.5e-09 66.2 73 46.6
Medtr4g013270 Medicago truncatula HOM05D001228 ORTHO05D003869 1.9e-09 65.9 57 54.4
BcaC01g05535 Brassica carinata HOM05D001228 ORTHO05D003869 3.3e-09 65.1 91 40.7
arahy.Tifrunner.gnm1.ann1.P8LEZG Arachis hypogaea HOM05D001228 ORTHO05D003869 4.3e-09 64.7 88 35.2
Zm00001eb191470 Zea mays HOM05D000431 ORTHO05D003869 5.6e-09 64.3 61 44.3
SHI12886 Sapria himalayana HOM05D001228 ORTHO05D003869 7.3e-09 63.9 50 58.0
Zm00001eb396690 Zea mays HOM05D001228 ORTHO05D003869 9.5e-09 63.5 56 41.1
BcaB01g03681 Brassica carinata HOM05D001228 ORTHO05D003869 2.1e-08 62.4 93 39.8
DCAR_023992 Daucus carota HOM05D001228 ORTHO05D003869 2.1e-08 62.4 93 37.6
Dinv35419 Davidia involucrata HOM05D001228 ORTHO05D003869 4.7e-08 61.2 119 37.0
Sc19g0002630 Simmondsia chinensis HOM05D001228 ORTHO05D003869 4.7e-08 61.2 87 39.1
CiPaw.10G161400 Carya illinoinensis HOM05D001228 ORTHO05D003869 6.1e-08 60.8 58 53.4
Os03g0298300 Oryza sativa ssp. japonica HOM05D001228 ORTHO05D003869 1.4e-07 59.7 53 39.6
vmacro20331 Vaccinium macrocarpon HOM05D001228 ORTHO05D003869 1.4e-07 59.7 78 43.6
PSO017G0146 Papaver somniferum HOM05D001228 ORTHO05D003869 1.8e-07 59.3 71 46.5
PSO349G0256 Papaver somniferum HOM05D001228 ORTHO05D003869 2.3e-07 58.9 83 42.2
EL10Ac7g16791 Beta vulgaris HOM05D001228 ORTHO05D003869 3.0e-07 58.5 84 38.1
Medtr4g015730 Medicago truncatula HOM05D001228 ORTHO05D003869 5.2e-07 57.8 55 47.3
Zm00001eb212010 Zea mays HOM05D001228 ORTHO05D003869 5.2e-07 57.8 72 40.3
QL07p033728 Quercus lobata HOM05D001228 ORTHO05D003869 8.9e-07 57.0 100 40.0
Haze_21096 Corylus avellana HOM05D001228 ORTHO05D003869 3.4e-06 55.1 54 53.7
Os03g0817100 Oryza sativa ssp. japonica HOM05D001228 ORTHO05D003869 3.4e-06 55.1 89 37.1
DCAR_028890 Daucus carota HOM05D001228 ORTHO05D003869 4.4e-06 54.7 72 43.1
DCAR_028892 Daucus carota HOM05D001228 ORTHO05D003869 4.4e-06 54.7 72 43.1
SGA_v2.0_scaffold135G34863 Striga asiatica HOM05D001228 ORTHO05D002377 5.7e-06 54.3 82 35.4
Oeu043062.1 Olea europaea HOM05D001228 ORTHO05D002377 7.5e-06 53.9 53 41.5


User provided reference genes

Program Settings