Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.1e-39 166.0 76 100.0
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.6e-39 163.7 76 97.4
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.6e-20 101.7 59 71.2
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.7e-19 97.8 55 72.7
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.9e-19 97.4 55 70.9
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 8.3e-19 96.7 48 79.2
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.1e-18 96.3 52 78.8
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.2e-18 94.7 51 70.6
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 7.1e-18 93.6 55 67.3
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.6e-17 92.4 58 65.5
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.6e-17 92.4 53 66.0
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.1e-17 92.0 58 62.1
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 2.1e-17 92.0 55 67.3
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 3.5e-17 91.3 56 62.5
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 7.8e-17 90.1 55 65.5
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.3e-16 88.6 50 70.0
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 2.3e-16 88.6 57 59.6
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.9e-16 87.8 55 63.6
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 6.6e-16 87.0 43 76.7
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.6e-16 87.0 55 65.5
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.5e-15 85.9 56 58.9
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-15 85.1 51 68.6
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-15 85.1 51 68.6
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.5e-15 85.1 51 68.6
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 3.3e-15 84.7 58 58.6
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 4.3e-15 84.3 59 59.3
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 7.3e-15 83.6 45 66.7
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 9.5e-15 83.2 70 52.9
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 1.6e-14 82.4 63 49.2
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.6e-14 82.4 56 55.4
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.6e-14 82.4 63 54.0
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.7e-14 80.9 54 61.1
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 8.1e-14 80.1 57 54.4
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.1e-14 80.1 63 50.8
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 8.1e-14 80.1 56 58.9
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.2e-13 77.4 43 67.4
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 6.8e-13 77.0 69 49.3
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 8.9e-13 76.6 73 47.9
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 8.9e-13 76.6 45 55.6
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.2e-12 76.3 56 55.4
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.0e-12 75.5 68 51.5
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.6e-12 75.1 62 46.8
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.6e-12 75.1 59 50.8
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 7.6e-12 73.6 43 58.1
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.3e-11 72.8 51 54.9
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.7e-11 72.4 52 50.0
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 2.9e-11 71.6 49 53.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 2.9e-11 71.6 43 58.1
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.8e-11 71.2 43 58.1
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.9e-11 70.9 66 42.4
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 8.4e-11 70.1 56 48.2
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 8.4e-11 70.1 61 44.3
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.1e-10 69.7 43 53.5
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.1e-10 69.7 43 53.5
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 1.1e-10 69.7 52 50.0
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.1e-10 69.7 57 45.6
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.4e-10 69.3 43 55.8
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.4e-10 69.3 61 41.0
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.4e-10 69.3 43 53.5
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.4e-10 69.3 43 53.5
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.4e-10 69.3 52 53.8
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.9e-10 68.9 61 45.9
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.4e-10 68.6 54 46.3
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.4e-10 68.6 43 55.8
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.2e-10 68.2 57 43.9
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 3.2e-10 68.2 43 55.8
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.2e-10 68.2 72 40.3
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 4.1e-10 67.8 43 53.5
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 5.4e-10 67.4 58 44.8
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.4e-10 67.4 51 49.0
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.4e-10 67.4 51 49.0
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 5.4e-10 67.4 51 49.0
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 5.4e-10 67.4 43 53.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 5.4e-10 67.4 43 53.5
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 7.1e-10 67.0 43 53.5
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 7.1e-10 67.0 43 53.5
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 7.1e-10 67.0 52 51.9
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.1e-10 67.0 45 57.8
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 1.2e-09 66.2 62 43.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 2.1e-09 65.5 58 44.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 2.1e-09 65.5 58 44.8
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 2.7e-09 65.1 43 53.5
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.5e-09 64.7 43 51.2
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.6e-09 64.3 45 57.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.3e-08 62.8 43 51.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-07 59.7 45 55.6
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.3e-07 58.2 44 54.5
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.3e-07 57.8 32 65.6


User provided reference genes

Program Settings