Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 2.2e-54 215.3 105 100.0
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.3e-48 194.1 101 93.1
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 5.9e-47 190.7 101 91.1
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 3.2e-45 184.9 102 85.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 7.2e-45 183.7 101 87.1
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.6e-44 182.6 101 86.1
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.7e-44 181.8 101 86.1
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.1e-44 180.6 101 88.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 6.1e-44 180.6 101 84.2
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 6.1e-44 180.6 101 87.1
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.0e-43 179.9 101 86.1
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-43 179.9 104 83.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.0e-43 179.9 104 83.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.4e-43 179.5 101 83.2
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.3e-43 178.7 101 87.1
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.0e-43 178.3 101 86.1
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.0e-43 178.3 104 83.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.0e-43 178.3 101 86.1
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.0e-43 178.3 101 86.1
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 3.0e-43 178.3 101 83.2
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.9e-43 177.9 101 86.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 6.7e-43 177.2 101 86.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 6.7e-43 177.2 101 82.2
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 8.8e-43 176.8 101 84.2
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.5e-42 176.0 101 86.1
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.5e-42 176.0 101 86.1
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.5e-42 175.3 101 86.1
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.5e-42 175.3 102 84.3
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 5.7e-42 174.1 101 82.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 5.7e-42 174.1 101 83.2
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 7.4e-42 173.7 101 82.2
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 7.4e-42 173.7 101 84.2
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 9.7e-42 173.3 101 81.2
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.7e-42 173.3 102 80.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.7e-42 173.3 102 80.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 9.7e-42 173.3 101 83.2
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 9.7e-42 173.3 101 82.2
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 9.7e-42 173.3 102 81.4
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.3e-41 172.9 101 83.2
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.3e-41 172.9 101 81.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.3e-41 172.9 102 81.4
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.7e-41 172.6 101 82.2
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 2.8e-41 171.8 100 81.0
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.8e-41 171.8 101 81.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.8e-41 171.8 101 81.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 3.7e-41 171.4 101 82.2
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 3.7e-41 171.4 101 81.2
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.7e-41 171.4 102 79.4
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 8.2e-41 170.2 101 80.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 8.2e-41 170.2 101 81.2
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 8.2e-41 170.2 102 79.4
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.2e-41 170.2 101 79.2
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 8.2e-41 170.2 101 80.2
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.8e-40 169.1 101 79.2
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 2.4e-40 168.7 102 77.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 2.4e-40 168.7 101 80.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.4e-40 168.7 101 80.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.4e-40 168.7 102 79.4
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.1e-40 168.3 101 78.2
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.1e-40 168.3 101 79.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.1e-40 167.9 101 80.2
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 5.3e-40 167.5 101 78.2
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 5.3e-40 167.5 102 76.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.3e-40 167.5 102 76.5
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 6.9e-40 167.2 104 76.0
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 6.9e-40 167.2 102 77.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.2e-39 166.4 102 78.4
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.5e-39 166.0 101 78.2
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.5e-39 166.0 101 79.2
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.5e-39 166.0 101 77.2
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.5e-39 166.0 101 79.2
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.5e-39 166.0 101 77.2
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.0e-39 165.6 101 78.2
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.4e-39 164.9 101 78.2
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.4e-39 164.9 101 77.2
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 5.9e-39 164.1 101 75.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 7.7e-39 163.7 102 77.5
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.7e-39 163.7 101 78.2
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 7.7e-39 163.7 104 76.0
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.0e-38 163.3 102 75.5
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.0e-38 163.3 101 78.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.0e-38 163.3 101 77.2
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.3e-38 162.9 101 78.2
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.3e-38 162.9 102 76.5
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.3e-38 162.9 101 78.2
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.3e-38 162.9 101 78.2
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.7e-38 162.5 101 75.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.2e-38 162.2 102 76.5
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.2e-38 162.2 101 77.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.2e-38 162.2 102 76.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 3.8e-38 161.4 102 75.5
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 3.8e-38 161.4 101 76.2
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.8e-38 161.4 101 75.2
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 3.8e-38 161.4 101 76.2
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.8e-38 161.4 101 74.3
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.0e-38 161.0 101 77.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 5.0e-38 161.0 102 75.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 5.0e-38 161.0 102 75.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.0e-38 161.0 102 75.5
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.0e-38 161.0 102 76.5
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 5.0e-38 161.0 101 76.2
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.5e-38 160.2 101 76.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.4e-37 159.5 102 74.5
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 1.9e-37 159.1 102 71.6
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.9e-37 159.1 101 75.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.9e-37 159.1 102 75.5
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.5e-37 158.7 101 75.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.2e-37 158.3 102 74.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 3.2e-37 158.3 101 76.2
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.2e-37 157.9 102 74.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 7.2e-37 157.1 101 73.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.4e-37 156.8 102 72.5
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 9.4e-37 156.8 101 74.3
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 9.4e-37 156.8 132 62.1
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.2e-36 156.4 102 71.6
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.6e-36 156.0 101 74.3
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.1e-36 155.6 84 86.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.6e-36 154.8 103 73.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 6.1e-36 154.1 143 58.7
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 6.1e-36 154.1 100 74.0
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.4e-35 152.9 102 70.6
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.8e-35 152.5 101 73.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.0e-35 151.8 101 70.3
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 9.7e-34 146.7 101 69.3
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.2e-31 139.8 101 62.4
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.3e-30 136.3 90 73.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.1e-28 129.0 90 65.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.7e-28 127.9 141 49.6
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 3.3e-26 121.7 89 62.9
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.3e-25 119.8 101 58.4
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.2e-25 119.0 101 56.4
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.1e-24 116.7 87 60.9
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 7.0e-24 114.0 70 81.4
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.3e-22 109.8 102 56.9
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 5.0e-22 107.8 93 59.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 6.5e-22 107.5 60 83.3
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.1e-20 102.4 63 76.2
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.3e-14 83.2 107 45.8
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 7.2e-13 77.4 84 51.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 9.8e-10 67.0 97 41.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 9.8e-10 67.0 43 74.4
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 4.1e-08 61.6 40 72.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 7.0e-08 60.8 83 41.0
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 4.5e-07 58.2 63 54.0
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.7e-06 56.2 75 44.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-06 55.5 36 72.2


User provided reference genes

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