Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00621 Erythranthe guttata HOM05D003182 ORTHO05D189614 3.5e-83 311.6 161 100.0
Migut.D00177 Erythranthe guttata HOM05D003182 ORTHO05D189300 2.5e-25 119.4 62 90.3
Migut.O00622 Erythranthe guttata HOM05D003182 ORTHO05D189880 4.1e-23 112.1 61 90.2
CSS0022412 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 7.2e-12 74.7 44 77.3
Peaxi162Scf00129g01034 Petunia axillaris HOM05D003182 ORTHO05D003829 9.4e-12 74.3 44 77.3
MSTRG.24015 Avicennia marina HOM05D003182 ORTHO05D003829 1.2e-11 73.9 50 68.0
Dinv35057 Davidia involucrata HOM05D003182 ORTHO05D003829 1.2e-11 73.9 42 81.0
TAR622G1170 Trochodendron aralioides HOM05D003182 ORTHO05D003829 1.6e-11 73.6 43 76.7
Migut.H00124 Erythranthe guttata HOM05D003182 ORTHO05D003829 2.7e-11 72.8 50 68.0
SGA_v2.0_scaffold135G34859 Striga asiatica HOM05D003182 ORTHO05D003829 2.7e-11 72.8 42 78.6
Nitab4.5_0003337g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 3.6e-11 72.4 42 81.0
Nitab4.5_0005176g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 3.6e-11 72.4 42 81.0
Cc07_g02310 Coffea canephora HOM05D003182 ORTHO05D003829 4.7e-11 72.0 42 78.6
PGR083G0239 Punica granatum HOM05D003182 ORTHO05D003829 4.7e-11 72.0 100 41.0
Migut.L01410 Erythranthe guttata HOM05D003182 ORTHO05D003829 1.0e-10 70.9 44 72.7
PGSC0003DMG402000497 Solanum tuberosum HOM05D003182 ORTHO05D003829 1.0e-10 70.9 42 78.6
SGA_v2.0_scaffold205G41704 Striga asiatica HOM05D003182 ORTHO05D003829 1.0e-10 70.9 42 76.2
Actinidia35739 Actinidia chinensis HOM05D003182 ORTHO05D003829 1.4e-10 70.5 42 73.8
Haze_14666 Corylus avellana HOM05D003182 ORTHO05D003829 1.8e-10 70.1 42 76.2
DCAR_011207 Daucus carota HOM05D003182 ORTHO05D003829 1.8e-10 70.1 44 72.7
Rhsim08G0055300 Rhododendron simsii HOM05D003182 ORTHO05D003829 1.8e-10 70.1 42 73.8
Hund25344 Selenicereus undatus HOM05D003182 ORTHO05D003829 1.8e-10 70.1 42 76.2
vmacro18240 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 1.8e-10 70.1 42 73.8
GSVIVG01032486001 Vitis vinifera HOM05D003182 ORTHO05D003829 1.8e-10 70.1 42 76.2
Eucgr.J02205 Eucalyptus grandis HOM05D003182 ORTHO05D003829 2.3e-10 69.7 42 76.2
Solyc02g086900.4 Solanum lycopersicum HOM05D003182 ORTHO05D003829 2.3e-10 69.7 114 43.9
Sopen02g031670 Solanum pennellii HOM05D003182 ORTHO05D003829 2.3e-10 69.7 114 43.9
TWI56G0688 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 2.3e-10 69.7 42 76.2
Manes.15G182900 Manihot esculenta HOM05D003182 ORTHO05D003829 3.0e-10 69.3 42 73.8
GSVIVG01020236001 Vitis vinifera HOM05D003182 ORTHO05D003829 3.0e-10 69.3 114 40.4
Oeu018700.3 Olea europaea HOM05D003182 ORTHO05D003829 3.9e-10 68.9 115 42.6
Sc16g0005420 Simmondsia chinensis HOM05D003182 ORTHO05D003829 3.9e-10 68.9 42 73.8
Gohir.A11G067400 Gossypium hirsutum HOM05D003182 ORTHO05D003829 5.2e-10 68.6 42 71.4
Gohir.D11G071300 Gossypium hirsutum HOM05D003182 ORTHO05D003829 5.2e-10 68.6 42 71.4
Gorai.007G076600 Gossypium raimondii HOM05D003182 ORTHO05D003829 5.2e-10 68.6 42 71.4
CiPaw.03G037600 Carya illinoinensis HOM05D003182 ORTHO05D003829 8.8e-10 67.8 42 73.8
COL.COLO4_28945 Corchorus olitorius HOM05D003182 ORTHO05D003829 8.8e-10 67.8 42 69.0
Duzib147G1033 Durio zibethinus HOM05D003182 ORTHO05D003829 8.8e-10 67.8 42 71.4
Lj2g0017775 Lotus japonicus HOM05D003182 ORTHO05D003829 8.8e-10 67.8 42 73.8
MBI16_g36058_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 8.8e-10 67.8 42 69.0
CSS0021280 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 1.1e-09 67.4 70 55.7
Ciclev10017499m.g Citrus clementina HOM05D003182 ORTHO05D003829 1.1e-09 67.4 44 68.2
FAN02G2729 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.4 50 60.0
FAN14G0389 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.4 50 60.0
FAN14G5751 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.4 50 60.0
Glyma.13G169200 Glycine max HOM05D003182 ORTHO05D003829 1.1e-09 67.4 42 71.4
SalBow2G3598 Salvia bowleyana HOM05D003182 ORTHO05D003829 1.1e-09 67.4 44 68.2
CAN.G206.33 Capsicum annuum HOM05D003182 ORTHO05D003829 1.5e-09 67.0 116 43.1
EL10Ac4g08569 Beta vulgaris HOM05D003182 ORTHO05D003829 2.0e-09 66.6 42 71.4
Glyma.19G009400 Glycine max HOM05D003182 ORTHO05D003829 2.0e-09 66.6 42 71.4
Prupe.3G283700 Prunus persica HOM05D003182 ORTHO05D003829 2.0e-09 66.6 42 69.0
FvH4_6g50610 Fragaria vesca HOM05D003182 ORTHO05D003829 2.6e-09 66.2 100 37.0
FAN09G2145 Fragaria x ananassa HOM05D003182 ORTHO05D003829 2.6e-09 66.2 100 37.0
Actinidia08167 Actinidia chinensis HOM05D003182 ORTHO05D003829 3.3e-09 65.9 42 71.4
ATR0730G138 Amborella trichopoda HOM05D003182 ORTHO05D003829 3.3e-09 65.9 115 43.5
Oeu003450.3 Olea europaea HOM05D003182 ORTHO05D003829 3.3e-09 65.9 42 71.4
Thecc.04G008600 Theobroma cacao HOM05D003182 ORTHO05D003829 3.3e-09 65.9 42 69.0
Cc11_g14640 Coffea canephora HOM05D003182 ORTHO05D003829 4.4e-09 65.5 42 71.4
MELO3C009954.2 Cucumis melo HOM05D003182 ORTHO05D003829 4.4e-09 65.5 42 69.0
Lalb_Chr02g0160081 Lupinus albus HOM05D003182 ORTHO05D003829 4.4e-09 65.5 50 60.0
Lalb_Chr02g0160261 Lupinus albus HOM05D003182 ORTHO05D003829 4.4e-09 65.5 50 60.0
RcHm_v2.0_Chr2g0171401 Rosa chinensis HOM05D003182 ORTHO05D003829 4.4e-09 65.5 43 65.1
THA.LOC104805399 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 4.4e-09 65.5 42 71.4
TAR374G1615 Trochodendron aralioides HOM05D003182 ORTHO05D003829 4.4e-09 65.5 42 69.0
arahy.Tifrunner.gnm1.ann1.5NVD8S Arachis hypogaea HOM05D003182 ORTHO05D003829 5.7e-09 65.1 60 58.3
Phvul.004G016800 Phaseolus vulgaris HOM05D003182 ORTHO05D003829 5.7e-09 65.1 42 66.7
Sed0022900 Sechium edule HOM05D003182 ORTHO05D003829 5.7e-09 65.1 42 66.7
TPR.G2315 Trifolium pratense HOM05D003182 ORTHO05D003829 5.7e-09 65.1 58 56.9
unitig_62.g23158 Utricularia gibba HOM05D003182 ORTHO05D003829 5.7e-09 65.1 114 43.0
VMungo0464G0504 Vigna mungo HOM05D003182 ORTHO05D003829 5.7e-09 65.1 42 66.7
Ah.04g163460 Amaranthus hybridus HOM05D003182 ORTHO05D003829 7.4e-09 64.7 42 69.0
Dinv15303 Davidia involucrata HOM05D003182 ORTHO05D003829 7.4e-09 64.7 42 69.0
FAN05G3372 Fragaria x ananassa HOM05D003182 ORTHO05D003829 7.4e-09 64.7 100 36.0
MD09G1034800 Malus domestica HOM05D003182 ORTHO05D003829 7.4e-09 64.7 43 62.8
Hund05992 Selenicereus undatus HOM05D003182 ORTHO05D003829 7.4e-09 64.7 42 71.4
AUR62014036 Chenopodium quinoa HOM05D003182 ORTHO05D003829 9.7e-09 64.3 42 71.4
Cpa.g.sc39.93 Carica papaya HOM05D003182 ORTHO05D003829 1.3e-08 63.9 42 66.7
CsaV3_3G042400 Cucumis sativus L. HOM05D003182 ORTHO05D003829 1.3e-08 63.9 42 66.7
Medtr6g007210 Medicago truncatula HOM05D003182 ORTHO05D003829 1.3e-08 63.9 42 69.0
CSS0050117 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 1.7e-08 63.5 42 69.0
AUR62005374 Chenopodium quinoa HOM05D003182 ORTHO05D003829 1.7e-08 63.5 42 71.4
Lj3C1051T18 Lonicera japonica HOM05D003182 ORTHO05D003829 1.7e-08 63.5 42 64.3
Nitab4.5_0001631g0010 Nicotiana tabacum HOM05D003182 ORTHO05D003829 1.7e-08 63.5 46 58.7
BcaB06g27467 Brassica carinata HOM05D003182 ORTHO05D003829 2.2e-08 63.2 43 65.1
Haze_12174 Corylus avellana HOM05D003182 ORTHO05D003829 2.2e-08 63.2 44 59.1
Psat2g106920 Pisum sativum HOM05D003182 ORTHO05D003829 2.8e-08 62.8 43 62.8
QL02p076707 Quercus lobata HOM05D003182 ORTHO05D003829 2.8e-08 62.8 42 66.7
Actinidia27785 Actinidia chinensis HOM05D003182 ORTHO05D003829 3.7e-08 62.4 55 54.5
MD16G1092000 Malus domestica HOM05D003182 ORTHO05D003829 3.7e-08 62.4 44 61.4
Potri.008G190200 Populus trichocarpa HOM05D003182 ORTHO05D003829 3.7e-08 62.4 42 64.3
THA.LOC104825287 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 3.7e-08 62.4 100 38.0
unitig_8.g3167 Utricularia gibba HOM05D003182 ORTHO05D003829 3.7e-08 62.4 42 64.3
Potri.009G147800 Populus trichocarpa HOM05D003182 ORTHO05D003829 4.8e-08 62.0 42 66.7
Sc11g0001200 Simmondsia chinensis HOM05D003182 ORTHO05D003829 4.8e-08 62.0 42 64.3
PGSC0003DMG400030991 Solanum tuberosum HOM05D003182 ORTHO05D003829 4.8e-08 62.0 44 61.4
A04p13190 Brassica napus HOM05D003182 ORTHO05D003829 6.3e-08 61.6 116 40.5
C04p46940 Brassica napus HOM05D003182 ORTHO05D003829 6.3e-08 61.6 116 40.5
BolC4t26288H Brassica oleracea HOM05D003182 ORTHO05D003829 6.3e-08 61.6 116 40.5
BraA04t16978Z Brassica rapa HOM05D003182 ORTHO05D003829 6.3e-08 61.6 116 40.5
ClCG10G014240 Citrullus lanatus HOM05D003182 ORTHO05D003829 8.2e-08 61.2 42 61.9
Nitab4.5_0000113g0300 Nicotiana tabacum HOM05D003182 ORTHO05D003829 8.2e-08 61.2 43 60.5
PSO063G3727 Papaver somniferum HOM05D003182 ORTHO05D003829 8.2e-08 61.2 42 64.3
PSO832G1777 Papaver somniferum HOM05D003182 ORTHO05D003829 8.2e-08 61.2 42 64.3
TPR.G13577 Trifolium pratense HOM05D003182 ORTHO05D003829 8.2e-08 61.2 44 59.1
Thhalv10027741m.g Eutrema salsugineum HOM05D003182 ORTHO05D003829 1.1e-07 60.8 121 38.8
Sabra09G0114000 Salix brachista HOM05D003182 ORTHO05D003829 1.1e-07 60.8 42 64.3
Sabra09G0116500 Salix brachista HOM05D003182 ORTHO05D003829 1.1e-07 60.8 42 64.3
Sp7g01670 Schrenkiella parvula HOM05D003182 ORTHO05D003829 1.1e-07 60.8 118 40.7
AL7G49710 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 1.4e-07 60.5 42 64.3
AT5G40270 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 1.4e-07 60.5 42 64.3
CANSAT64G2540 Cannabis sativa HOM05D003182 ORTHO05D003829 1.4e-07 60.5 42 66.7
Carub.0007s3536 Capsella rubella HOM05D003182 ORTHO05D003829 1.4e-07 60.5 42 64.3
Thecc.02G248300 Theobroma cacao HOM05D003182 ORTHO05D003829 1.4e-07 60.5 42 61.9
Aa31LG9G1350 Aethionema arabicum HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 64.3
Gohir.A03G140101 Gossypium hirsutum HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 61.9
Gohir.D02G162900 Gossypium hirsutum HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 61.9
Gorai.005G182900 Gossypium raimondii HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 61.9
PGR119G1400 Punica granatum HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 61.9
Sabra08G0144400 Salix brachista HOM05D003182 ORTHO05D003829 1.8e-07 60.1 42 59.5
TWI18G0345 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 1.8e-07 60.1 40 65.0
COL.COLO4_36968 Corchorus olitorius HOM05D003182 ORTHO05D003829 2.4e-07 59.7 108 36.1
RhsimUnG0091000 Rhododendron simsii HOM05D003182 ORTHO05D003829 2.4e-07 59.7 43 62.8
Atru.chr11.2016 Acer truncatum HOM05D003182 ORTHO05D003829 3.1e-07 59.3 42 61.9
Glyma.02G034400 Glycine max HOM05D003182 ORTHO05D003829 3.1e-07 59.3 43 58.1
Atru.chr11.2009 Acer truncatum HOM05D003182 ORTHO05D003829 4.1e-07 58.9 42 59.5
EL10Ac6g13670 Beta vulgaris HOM05D003182 ORTHO05D003829 4.1e-07 58.9 42 66.7
SGA_v2.0_scaffold165G38249 Striga asiatica HOM05D003182 ORTHO05D003829 4.1e-07 58.9 112 33.9
arahy.Tifrunner.gnm1.ann1.L7KCN6 Arachis hypogaea HOM05D003182 ORTHO05D003829 5.3e-07 58.5 53 58.5
CAN.G376.8 Capsicum annuum HOM05D003182 ORTHO05D003829 5.3e-07 58.5 44 56.8
CARHR261820 Cardamine hirsuta HOM05D003182 ORTHO05D003829 5.3e-07 58.5 118 39.0
Hma1.2p1_0867F.1_g230210 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 5.3e-07 58.5 42 61.9
Cpa.g.sc69.27 Carica papaya HOM05D003182 ORTHO05D003829 7.0e-07 58.2 42 61.9
DCAR_007091 Daucus carota HOM05D003182 ORTHO05D003829 7.0e-07 58.2 42 61.9
ECA233G4670 Erigeron canadensis HOM05D003182 ORTHO05D003829 7.0e-07 58.2 42 61.9
Pp3c17_2920 Physcomitrium patens HOM05D003182 ORTHO05D003829 7.0e-07 58.2 44 56.8
Zm00001eb334290 Zea mays HOM05D003182 ORTHO05D003829 7.0e-07 58.2 42 57.1
arahy.Tifrunner.gnm1.ann1.P43H24 Arachis hypogaea HOM05D003182 ORTHO05D003829 9.1e-07 57.8 43 55.8
Lsat_1_v5_gn_8_157280 Lactuca sativa HOM05D003182 ORTHO05D003829 9.1e-07 57.8 42 61.9
Lalb_Chr05g0228151 Lupinus albus HOM05D003182 ORTHO05D003829 9.1e-07 57.8 43 55.8
Nn3g16899 Nelumbo nucifera HOM05D003182 ORTHO05D003829 9.1e-07 57.8 42 61.9
Nitab4.5_0018380g0010 Nicotiana tabacum HOM05D003182 ORTHO05D003829 9.1e-07 57.8 43 58.1
Peaxi162Scf00338g00024 Petunia axillaris HOM05D003182 ORTHO05D003829 9.1e-07 57.8 42 59.5
Solyc05g005610.4 Solanum lycopersicum HOM05D003182 ORTHO05D022870 9.1e-07 57.8 44 54.5
Sopen05g001610 Solanum pennellii HOM05D003182 ORTHO05D003829 1.2e-06 57.4 44 54.5
AT5G40290 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 1.6e-06 57.0 42 59.5
Duzib248G0927 Durio zibethinus HOM05D003182 ORTHO05D003829 2.0e-06 56.6 42 57.1
HanXRQChr12g0368591 Helianthus annuus HOM05D003182 ORTHO05D003829 2.0e-06 56.6 40 65.0
Actinidia01705 Actinidia chinensis HOM05D003182 ORTHO05D003829 2.6e-06 56.2 42 59.5
arahy.Tifrunner.gnm1.ann1.3N6FKX Arachis hypogaea HOM05D003182 ORTHO05D003829 2.6e-06 56.2 42 54.8
Mapoly0016s0133 Marchantia polymorpha HOM05D003182 ORTHO05D003829 2.6e-06 56.2 43 58.1
Aqoxy3G02981 Aquilegia oxysepala HOM05D003182 ORTHO05D003829 3.5e-06 55.8 40 62.5
Oeu043063.1 Olea europaea HOM05D003182 ORTHO05D003829 3.5e-06 55.8 42 61.9
RcHm_v2.0_Chr4g0443921 Rosa chinensis HOM05D003182 ORTHO05D003829 4.5e-06 55.5 42 57.1
CANSAT01G2334 Cannabis sativa HOM05D003182 ORTHO05D003829 5.9e-06 55.1 43 51.2
CiPaw.05G150700 Carya illinoinensis HOM05D003182 ORTHO05D003829 5.9e-06 55.1 42 54.8
DCAR_031100 Daucus carota HOM05D003182 ORTHO05D003829 5.9e-06 55.1 42 57.1
FvH4_4g34540 Fragaria vesca HOM05D003182 ORTHO05D003829 5.9e-06 55.1 42 57.1
FAN12G1714 Fragaria x ananassa HOM05D003182 ORTHO05D003829 5.9e-06 55.1 42 57.1
TAR623G1545 Trochodendron aralioides HOM05D000001 ORTHO05D011287 5.9e-06 55.1 33 75.8
vmacro01182 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 5.9e-06 55.1 50 50.0
Ciclev10031446m.g Citrus clementina HOM05D003182 ORTHO05D003829 7.7e-06 54.7 42 61.9
Os01g0109300 Oryza sativa ssp. japonica HOM05D003182 ORTHO05D003829 7.7e-06 54.7 42 54.8
Rhsim12G0047300 Rhododendron simsii HOM05D003182 ORTHO05D003829 7.7e-06 54.7 43 60.5


User provided reference genes

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