Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.1e-180 635.6 321 100.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 5.1e-150 534.6 278 96.4
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.1e-143 512.7 322 80.4
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.3e-142 510.0 319 81.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.5e-141 506.5 327 78.3
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.5e-130 468.4 290 81.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.4e-128 461.5 327 70.0
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.4e-128 461.5 327 70.0
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.2e-127 460.3 323 71.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.5e-127 458.8 328 71.3
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.3e-126 456.8 318 72.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.8e-126 456.4 318 70.8
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 5.1e-126 454.9 322 70.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 8.7e-126 454.1 320 70.9
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 8.7e-126 454.1 322 70.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.5e-125 453.4 313 71.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 9.6e-125 450.7 321 69.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 9.6e-125 450.7 322 70.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.3e-124 450.3 316 70.9
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.4e-123 446.0 320 70.3
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 5.3e-123 444.9 321 67.6
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 5.3e-123 444.9 322 68.9
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 5.3e-123 444.9 320 69.4
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 6.9e-123 444.5 321 69.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.6e-122 442.6 321 68.5
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.6e-122 442.6 319 69.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.4e-122 442.2 321 67.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 4.5e-122 441.8 329 67.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 4.5e-122 441.8 318 68.9
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.8e-122 441.4 329 67.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 7.6e-122 441.0 321 68.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 7.6e-122 441.0 321 68.2
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.6e-122 441.0 322 69.9
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.3e-121 440.3 322 69.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.3e-121 440.3 315 70.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.2e-121 439.5 322 68.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.9e-121 439.1 321 69.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.9e-121 439.1 322 68.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.9e-121 439.1 323 68.4
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.9e-121 439.1 323 68.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 4.9e-121 438.3 315 69.2
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 6.4e-121 438.0 322 68.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 8.4e-121 437.6 315 70.2
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.4e-120 436.8 321 68.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.4e-120 436.8 322 68.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-120 435.6 315 70.2
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.2e-120 435.6 355 64.2
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 4.2e-120 435.3 316 69.9
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.2e-120 435.3 315 69.8
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 5.5e-120 434.9 322 68.0
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-120 434.9 315 70.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.1e-120 434.5 323 67.8
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.6e-119 433.3 315 68.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.1e-119 433.0 315 69.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.7e-119 432.6 314 68.5
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.5e-119 432.2 312 67.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.0e-118 429.1 314 65.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.5e-117 426.0 314 66.2
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.5e-117 426.0 374 59.9
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.3e-117 425.2 315 68.9
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 7.4e-117 424.5 340 62.4
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 9.6e-117 424.1 316 69.3
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.8e-116 422.5 316 65.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 3.7e-116 422.2 317 68.1
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 6.2e-116 421.4 322 65.2
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 8.2e-116 421.0 308 69.5
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 1.8e-115 419.9 315 66.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.1e-115 419.1 316 69.0
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.3e-115 418.3 320 65.9
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.0e-115 417.5 317 64.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 7.6e-114 414.5 322 66.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.0e-113 414.1 311 65.6
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.3e-113 413.7 318 65.4
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.3e-113 413.7 315 64.4
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.9e-113 412.5 323 64.7
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.8e-113 412.1 319 66.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.9e-113 411.8 321 64.8
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 6.5e-113 411.4 323 64.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.1e-112 410.6 320 66.6
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-112 410.2 323 64.4
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.5e-112 409.5 323 64.7
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.5e-112 409.5 319 65.8
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.2e-112 408.7 316 66.5
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 7.1e-112 407.9 318 62.9
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.1e-111 406.4 323 63.8
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 7.9e-111 404.4 324 64.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.1e-110 401.7 316 64.6
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 6.7e-110 401.4 335 62.1
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 4.8e-108 395.2 324 63.3
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 8.2e-108 394.4 344 58.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.8e-107 393.3 313 62.3
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.5e-106 390.2 313 62.3
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 9.4e-104 380.9 295 63.1
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.1e-103 379.8 298 63.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.0e-102 377.5 315 59.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.5e-101 373.6 270 67.4
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.4e-101 371.3 260 71.2
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 5.3e-99 365.2 246 73.2
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 3.8e-97 359.0 316 57.3
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 5.7e-93 345.1 241 72.2
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 7.0e-91 338.2 312 57.1
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.7e-89 333.6 315 53.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 8.5e-89 331.3 239 68.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-88 328.9 230 72.6
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.2e-87 327.4 233 70.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.8e-86 323.6 246 67.1
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.3e-86 323.2 203 78.3
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-79 300.1 238 65.5
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.7e-79 299.7 239 64.4
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.4e-78 297.4 314 51.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 4.7e-71 272.3 304 49.3
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-69 266.5 241 61.4
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.7e-69 265.4 238 60.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 4.8e-68 262.3 190 66.8
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.7e-63 245.7 192 65.6
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.5e-53 214.2 131 79.4
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 5.8e-53 212.2 182 59.3
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 5.8e-53 212.2 321 41.1
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 3.6e-47 193.0 322 39.8
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 7.3e-40 168.7 323 37.5
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.1e-39 167.2 117 72.6
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.1e-33 146.0 112 63.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.1e-33 146.0 112 63.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.1e-33 146.0 112 63.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-31 141.4 111 64.0
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-31 138.7 107 65.4
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 4.0e-30 136.3 126 57.9
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.2e-29 134.8 122 51.6
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.4e-27 127.9 90 68.9
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-26 124.8 82 70.7
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.5e-24 117.1 82 73.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 8.4e-20 102.1 81 65.4
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-16 91.3 76 59.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 2.8e-15 87.0 85 51.8
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-13 80.5 54 68.5
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 4.5e-13 79.7 57 63.2
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 9.9e-13 78.6 61 63.9
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 9.9e-13 78.6 61 63.9
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.6e-07 61.2 43 69.8


User provided reference genes

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