Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-46 189.1 102 100.0
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.1e-45 186.4 102 98.0
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 7.0e-29 130.6 99 76.8
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.0e-24 116.7 99 65.7
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 2.0e-20 102.4 96 55.2
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.0e-19 100.1 99 52.5
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.3e-19 99.0 80 57.5
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.3e-19 99.0 99 55.6
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.1e-18 96.7 88 52.3
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 4.3e-18 94.7 87 56.3
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.6e-18 94.4 77 57.1
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 5.6e-18 94.4 83 55.4
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 7.3e-18 94.0 74 63.5
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 9.5e-18 93.6 87 48.3
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.6e-17 92.8 80 57.5
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.6e-17 92.8 110 50.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.6e-17 92.8 83 51.8
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.6e-17 92.8 80 56.2
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.6e-17 92.8 80 53.8
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.6e-17 92.8 74 60.8
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.8e-17 92.0 83 50.6
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.7e-17 91.3 87 47.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.1e-17 90.9 73 67.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.0e-16 90.1 90 53.3
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.8e-16 89.4 99 52.5
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.8e-16 89.4 82 51.2
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.3e-16 89.0 95 52.6
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.3e-16 89.0 99 52.5
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 4.0e-16 88.2 74 62.2
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 6.8e-16 87.4 80 56.2
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 8.9e-16 87.0 98 50.0
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 8.9e-16 87.0 76 56.6
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.2e-15 86.7 72 65.3
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.5e-15 86.3 81 58.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.5e-15 86.3 99 51.5
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 2.0e-15 85.9 75 56.0
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 3.4e-15 85.1 101 43.6
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 3.4e-15 85.1 101 43.6
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 3.4e-15 85.1 74 62.2
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 4.4e-15 84.7 75 57.3
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 7.5e-15 84.0 74 60.8
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 9.8e-15 83.6 94 47.9
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.3e-14 83.2 74 59.5
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.3e-14 83.2 104 47.1
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 2.2e-14 82.4 79 54.4
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 2.2e-14 82.4 79 54.4
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 4.9e-14 81.3 80 50.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.9e-14 81.3 103 45.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 6.4e-14 80.9 80 48.8
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 6.4e-14 80.9 80 53.8
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 8.3e-14 80.5 74 56.8
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 8.3e-14 80.5 79 57.0
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 8.3e-14 80.5 104 47.1
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.4e-13 79.7 74 55.4
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.8e-13 79.3 80 48.8
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.8e-13 79.3 79 53.2
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 2.4e-13 79.0 99 52.5
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 4.1e-13 78.2 97 46.4
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.4e-13 77.8 85 48.2
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.4e-13 77.8 85 48.2
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.4e-13 77.8 81 53.1
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.4e-13 77.8 81 53.1
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.0e-13 77.4 85 48.2
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.0e-13 77.4 85 48.2
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 9.2e-13 77.0 79 51.9
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 9.2e-13 77.0 80 45.0
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.2e-12 76.6 76 53.9
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.6e-12 76.3 80 43.8
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.6e-12 76.3 80 43.8
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.6e-12 76.3 79 51.9
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.0e-12 75.9 85 48.2
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-12 75.9 85 48.2
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-12 75.9 85 48.2
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.7e-12 75.5 80 43.8
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 2.7e-12 75.5 77 50.6
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.6e-12 74.7 73 47.9
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 4.6e-12 74.7 79 49.4
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 6.0e-12 74.3 75 52.0
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.3e-11 73.2 61 55.7
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.3e-11 73.2 78 52.6
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 1.7e-11 72.8 55 65.5
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.3e-11 72.4 61 62.3
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 3.0e-11 72.0 73 46.6
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 8.6e-11 70.5 86 45.3
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.1e-10 70.1 55 63.6
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.1e-10 70.1 55 63.6
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.9e-10 69.3 55 63.6
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 4.3e-10 68.2 74 54.1
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 7.3e-10 67.4 81 49.4
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 2.1e-09 65.9 76 50.0
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 2.8e-09 65.5 82 51.2
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 3.6e-09 65.1 79 48.1
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 3.6e-09 65.1 75 46.7
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.7e-09 64.7 90 43.3
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.7e-09 64.7 67 53.7
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 8.0e-09 63.9 82 43.9
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.1e-08 63.5 56 53.6
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 3.1e-08 62.0 80 43.8
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 3.1e-08 62.0 106 33.0
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 5.2e-08 61.2 61 47.5
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.5e-07 59.7 74 47.3
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.6e-07 58.9 74 45.9
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 5.8e-07 57.8 79 45.6
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.3e-06 56.6 56 53.6
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.7e-06 56.2 52 53.8


User provided reference genes

Program Settings