Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 0.0e+00 1275.8 646 100.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 0.0e+00 1253.0 646 98.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 5.7e-302 1040.4 639 82.9
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.2e-298 1028.5 645 81.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.5e-297 1025.8 640 81.9
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.8e-280 968.4 630 79.8
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-278 961.8 612 82.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 4.4e-278 961.1 634 77.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.8e-278 960.7 635 78.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.2e-277 958.7 621 80.5
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 3.5e-275 951.4 580 83.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.9e-274 948.0 587 82.3
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.9e-274 948.0 617 79.1
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.0e-274 947.6 623 78.8
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 8.6e-274 946.8 633 77.9
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.5e-273 946.0 627 78.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.3e-273 943.7 623 78.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 9.5e-273 943.3 633 77.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.2e-272 943.0 636 78.0
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.6e-272 941.4 619 80.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.2e-272 940.6 639 75.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.1e-271 939.9 634 77.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.0e-271 937.9 637 76.8
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 6.8e-271 937.2 634 76.3
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.0e-270 935.6 628 77.5
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.4e-270 934.5 588 81.0
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.4e-270 934.5 613 78.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 6.4e-269 930.6 605 78.8
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.3e-269 930.2 638 76.3
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.1e-268 929.9 601 80.2
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.4e-268 928.7 582 80.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.4e-268 928.7 619 78.0
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.2e-268 928.3 629 78.9
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.2e-268 928.3 612 78.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.2e-267 926.4 618 76.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.1e-267 925.6 617 77.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 6.0e-267 924.1 582 80.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.0e-266 923.3 581 80.7
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.1e-266 921.0 615 77.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.5e-265 919.5 633 76.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.3e-265 918.3 625 76.0
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.3e-265 918.3 581 82.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.6e-265 917.5 622 76.0
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.3e-265 917.1 573 81.8
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 9.5e-265 916.8 586 81.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.1e-264 915.6 608 77.8
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.6e-264 914.8 573 80.5
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.1e-264 913.7 625 75.8
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.3e-263 912.1 625 75.7
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.3e-263 912.1 632 77.4
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.3e-263 912.1 616 77.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.2e-262 909.8 586 81.6
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.4e-262 907.9 614 78.0
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.6e-262 907.1 618 75.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 9.9e-262 906.7 632 76.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.2e-261 905.6 637 74.3
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 6.4e-261 904.0 587 80.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-260 902.9 626 75.6
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 9.2e-260 900.2 578 79.8
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 6.0e-259 897.5 561 81.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.0e-258 896.7 637 73.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.7e-258 896.0 583 78.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.1e-258 894.4 578 78.7
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.1e-258 894.4 613 76.0
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 4.3e-257 891.3 578 78.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.1e-256 889.0 611 75.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.7e-256 887.9 609 75.9
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 8.1e-256 887.1 578 78.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 8.1e-256 887.1 584 77.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.2e-255 884.4 642 73.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.6e-254 882.1 597 76.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.3e-253 879.8 586 78.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.7e-253 879.4 583 77.9
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 3.8e-253 878.2 551 81.1
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 3.2e-252 875.2 623 73.2
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 5.4e-252 874.4 604 75.8
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.5e-251 871.7 604 75.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.6e-251 871.3 625 72.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.3e-250 869.0 619 73.2
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 5.8e-246 854.4 589 74.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.6e-243 844.7 581 75.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.8e-243 844.0 524 80.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.0e-242 843.6 592 73.8
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.7e-242 842.8 579 74.8
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.0e-242 842.0 589 75.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.8e-240 835.5 582 74.4
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 6.2e-240 834.3 607 71.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.1e-239 833.6 631 70.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.1e-239 832.0 704 64.9
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.3e-239 831.2 588 74.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 6.9e-239 830.9 585 74.0
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 3.4e-238 828.6 569 74.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.9e-238 827.0 584 73.5
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-237 826.2 583 73.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.7e-237 826.2 583 73.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.2e-237 825.9 616 71.4
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.9e-237 825.5 584 73.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.9e-237 824.7 625 69.8
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.9e-236 822.8 626 70.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.4e-236 822.4 624 69.7
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.4e-236 821.2 606 72.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 7.1e-236 820.8 625 69.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.6e-235 819.7 654 67.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.6e-235 818.1 620 69.8
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-234 816.6 624 70.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.8e-234 816.2 589 72.8
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.3e-234 815.8 630 69.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.5e-233 812.4 595 72.3
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 6.2e-232 807.7 591 71.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.8e-231 806.2 590 71.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.8e-231 806.2 613 68.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.1e-231 805.4 629 67.9
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 4.0e-231 805.1 617 69.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.4e-230 802.0 615 69.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.6e-230 800.8 565 74.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.8e-229 798.5 560 73.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.9e-229 798.1 557 74.1
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.4e-223 780.0 629 68.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.9e-221 772.3 599 70.8
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.8e-218 763.1 573 71.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.4e-215 752.7 535 72.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 9.0e-215 750.7 542 72.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.5e-214 750.0 526 73.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.4e-214 748.8 513 72.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.5e-214 748.4 574 69.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.0e-213 747.3 412 88.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.6e-211 740.0 625 63.4
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.7e-210 734.6 546 69.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 4.8e-208 728.4 631 61.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 8.2e-208 727.6 412 86.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.1e-207 725.3 613 63.3
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-207 724.9 525 71.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.4e-206 722.2 420 84.8
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.3e-202 709.5 563 68.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-200 702.2 407 84.8
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.1e-199 699.1 533 68.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-199 698.7 531 68.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.3e-199 698.4 587 63.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.0e-197 691.8 535 67.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.9e-196 689.9 633 60.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.5e-189 664.8 533 65.7
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.9e-188 663.3 496 68.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.1e-187 658.3 517 67.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.8e-186 654.8 529 63.9
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.0e-177 626.7 425 78.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.9e-168 595.5 599 53.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.0e-158 563.5 412 70.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.6e-157 558.5 475 61.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.5e-156 556.6 531 58.6
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 9.2e-143 511.5 352 77.8
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.8e-137 492.3 328 78.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.5e-134 483.0 457 58.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.3e-108 396.4 239 82.0
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.1e-78 296.2 157 93.0
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-66 258.5 145 89.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 8.6e-48 196.1 167 60.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 6.2e-46 189.9 167 58.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 8.0e-46 189.5 164 59.1
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 5.2e-45 186.8 164 58.5
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.1e-42 179.1 123 72.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 4.4e-36 157.1 98 81.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 4.9e-27 127.1 91 70.3
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 6.0e-25 120.2 115 58.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.6e-24 116.7 91 64.8
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.2e-22 110.2 286 28.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-21 109.0 280 30.7
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.8e-20 103.6 60 86.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-17 94.7 190 33.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-16 91.3 86 54.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-16 91.3 91 59.3
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-15 89.0 189 35.4
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.5e-15 89.0 70 77.1
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.5e-12 79.0 126 34.1
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-09 67.8 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 3.0e-08 64.7 54 53.7
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.6e-07 60.5 58 56.9


User provided reference genes

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