Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 0.0e+00 2368.2 1276 100.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 0.0e+00 1333.2 1420 60.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 0.0e+00 1305.0 1404 59.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.6e-268 930.2 1166 52.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.0e-262 909.4 1484 45.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 7.4e-253 878.2 1324 46.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.5e-242 842.4 1390 45.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.8e-236 822.4 1342 44.6
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.0e-234 817.0 1394 43.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.7e-233 813.9 1412 42.9
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.8e-225 786.2 1328 44.0
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 8.0e-223 778.5 1292 44.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.0e-222 776.5 1355 42.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.2e-221 774.6 1292 44.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.4e-221 772.7 1332 44.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.4e-221 772.7 1339 41.9
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.7e-220 770.8 1332 43.5
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.9e-220 769.2 1339 42.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 6.3e-220 768.8 1328 44.2
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.8e-219 767.3 1395 42.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.6e-218 764.2 1332 42.0
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.5e-218 762.7 1379 42.6
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 7.7e-218 761.9 1400 42.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 3.3e-216 756.5 1370 43.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.0e-213 747.3 1411 42.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 4.9e-212 742.7 1363 41.4
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.4e-211 739.2 1351 42.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.2e-210 738.0 1303 40.7
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.0e-209 734.9 1262 42.7
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.6e-209 732.3 1306 42.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-208 730.3 1330 42.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 2.0e-205 720.7 1383 40.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.7e-204 717.6 1269 42.5
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 7.0e-203 712.2 1244 43.4
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 9.2e-203 711.8 1366 40.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.7e-202 710.3 1244 42.8
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 6.0e-202 709.1 1274 42.1
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 6.6e-201 705.7 1239 41.6
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 6.6e-201 705.7 1377 41.2
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.0e-197 694.1 1284 42.0
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 7.5e-197 692.2 1340 41.3
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.2e-196 690.6 1241 41.1
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.4e-195 688.0 1302 41.7
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.2e-194 684.9 1256 42.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.6e-194 684.5 1248 40.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 5.1e-193 679.5 1265 41.0
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 9.5e-192 675.2 1255 40.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.2e-191 674.9 1328 40.4
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 8.1e-191 672.2 1267 41.9
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 5.2e-190 669.5 1250 41.6
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 5.8e-189 666.0 1233 41.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 9.9e-189 665.2 1311 41.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.4e-187 661.4 1267 40.9
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.4e-187 660.6 1170 41.7
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 4.1e-187 659.8 1278 41.8
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 5.4e-187 659.4 1297 39.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.1e-186 657.5 1194 42.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.7e-186 657.1 1285 40.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 7.8e-186 655.6 1162 43.1
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.0e-185 653.7 1228 41.0
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 6.6e-185 652.5 1267 40.1
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.8e-183 647.1 1270 40.2
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 6.2e-183 646.0 1215 40.7
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 8.1e-183 645.6 1245 40.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.5e-181 641.3 1249 40.8
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.6e-181 640.6 1306 38.7
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.6e-181 640.6 1152 42.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 9.9e-181 638.6 1388 38.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 3.0e-177 627.1 1194 40.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.5e-176 624.0 1346 39.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 4.3e-176 623.2 1239 40.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.8e-175 620.5 1243 40.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.5e-173 613.2 1338 38.7
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.3e-169 601.7 1275 38.8
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.6e-168 595.5 1131 41.3
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.6e-157 560.8 1258 36.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.1e-155 555.4 1478 33.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 5.5e-155 553.1 1221 38.1
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.1e-154 551.2 1101 40.4
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.5e-152 544.3 1236 36.1
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 5.7e-152 543.1 1329 37.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-148 531.9 954 40.4
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.9e-147 528.1 1318 37.4
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.9e-147 528.1 1214 37.6
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 9.3e-147 525.8 1210 37.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-146 525.4 1210 37.5
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.1e-146 524.6 1266 36.7
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.3e-145 521.9 1310 36.0
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 6.7e-145 519.6 1302 37.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.9e-144 518.1 1203 36.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.3e-144 517.3 1250 36.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 5.7e-144 516.5 1307 36.3
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.6e-143 515.0 1298 36.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.2e-143 514.6 1181 37.5
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 5.9e-141 506.5 444 62.4
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.2e-140 504.6 988 40.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.8e-140 503.8 1253 37.4
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.4e-137 495.4 1244 36.1
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-136 491.5 599 52.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.4e-134 484.6 823 41.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 6.7e-129 466.5 1148 36.2
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.5e-120 438.7 654 49.2
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.9e-116 424.5 789 41.2
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.5e-115 421.4 622 47.1
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 3.1e-110 404.4 899 36.2
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.2e-107 394.4 629 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 3.0e-97 361.3 671 41.6
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.5e-93 347.8 666 40.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 3.5e-93 347.8 496 45.4
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.7e-92 345.5 1217 31.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.7e-87 328.9 622 40.7
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 8.1e-82 310.1 511 43.1
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.3e-81 308.5 474 42.2
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.9e-75 288.9 604 42.7
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-72 279.6 305 51.1
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 3.8e-71 274.6 416 47.6
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.8e-65 255.8 566 36.4
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 9.6e-59 233.4 281 47.0
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 6.2e-50 204.1 492 32.9
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 4.0e-49 201.4 492 33.3
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 4.9e-47 194.5 569 31.1
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 4.6e-45 188.0 869 26.0
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.0e-40 172.6 151 57.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 3.0e-36 158.7 451 31.3
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.6e-32 145.6 458 32.5
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 7.6e-32 144.1 228 38.6
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 8.5e-31 140.6 334 36.2
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.1e-30 140.2 404 34.7
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 7.9e-29 134.0 271 45.0
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 6.7e-28 131.0 522 31.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.3e-27 128.6 287 36.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 5.7e-27 127.9 235 38.3
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 6.3e-26 124.4 258 45.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-21 110.2 488 30.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.0e-20 105.5 120 49.2
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 3.3e-19 102.1 662 25.2
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-16 93.6 105 68.6
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.5e-15 87.8 174 38.5
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-12 79.0 61 60.7
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.4e-09 70.1 55 63.6
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.8e-07 62.0 184 32.1


User provided reference genes

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