Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 2049.2 1070 100.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1538.1 1058 76.7
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1488.4 1050 75.7
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1469.5 1063 74.5
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1446.4 1085 73.0
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1262.3 1057 65.2
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1215.3 1077 63.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1205.7 1077 63.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1203.3 1077 63.2
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1196.8 1061 61.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1186.4 1072 61.8
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1179.1 1063 60.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1177.9 1066 62.0
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1161.7 1042 61.5
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1159.8 1067 59.4
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 936 62.7
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1141.7 892 64.8
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1129.8 1078 59.8
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1123.6 1081 58.3
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1120.5 1072 57.7
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1116.7 1065 59.9
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1115.9 1069 58.7
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1110.9 1054 58.1
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1105.1 1128 54.9
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1101.3 1063 57.9
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1099.0 1043 58.2
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1097.0 1049 57.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1087.0 1050 57.1
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1086.6 1050 57.3
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1085.9 1065 59.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1084.3 1074 55.5
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1080.9 1055 56.3
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 1.5e-311 1073.2 918 60.0
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 1.9e-310 1069.3 1071 56.7
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 5.6e-310 1067.8 1054 56.1
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 4.7e-309 1064.7 1057 55.4
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 6.1e-309 1064.3 927 59.2
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 2.6e-307 1058.9 1057 55.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 2.6e-307 1058.9 1057 56.4
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 7.5e-307 1057.4 1052 57.5
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 2.8e-306 1055.4 1064 54.9
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 4.8e-306 1054.7 1048 55.5
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 8.3e-306 1053.9 1065 56.7
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 8.3e-306 1053.9 1065 57.0
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 8.3e-306 1053.9 1072 54.9
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 1.4e-305 1053.1 1075 57.0
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.4e-305 1052.4 1058 54.2
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 3.1e-305 1052.0 1031 57.0
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 9.1e-305 1050.4 1059 55.7
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 1.2e-304 1050.0 1062 54.0
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 4.5e-304 1048.1 1060 56.2
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 1.1e-302 1043.5 1061 55.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 2.5e-302 1042.3 1068 54.5
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 9.5e-302 1040.4 1061 56.5
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 1.2e-301 1040.0 1165 51.6
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 1.2e-301 1040.0 1057 54.5
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 6.1e-301 1037.7 1016 56.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 8.0e-301 1037.3 1044 56.2
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 1.4e-300 1036.6 923 58.7
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 1.2e-299 1033.5 1058 54.7
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 5.7e-299 1031.2 1077 52.9
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-298 1030.0 1056 54.5
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 2.4e-297 1025.8 1098 53.4
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 1.0e-295 1020.4 1076 53.4
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 1.5e-294 1016.5 1073 53.2
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 5.4e-289 998.0 1077 53.1
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 1.4e-281 973.4 1091 50.9
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 3.5e-280 968.8 1060 53.4
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 3.5e-280 968.8 1060 53.4
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 7.8e-280 967.6 1174 50.1
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 7.8e-280 967.6 1061 51.1
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 1.7e-279 966.5 1054 50.7
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.5e-278 963.4 1073 50.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 4.7e-277 958.4 1067 50.2
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 4.7e-277 958.4 1064 51.7
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 1.1e-273 947.2 1065 50.3
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 2.1e-272 943.0 1053 52.4
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 2.7e-272 942.6 1062 53.0
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 2.5e-270 936.0 897 55.9
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 3.6e-269 932.2 1540 40.7
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 3.9e-263 912.1 1060 49.4
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 2.3e-255 886.3 1065 49.0
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.8e-252 876.7 965 50.3
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 9.0e-244 847.8 1055 45.8
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 3.4e-243 845.9 934 49.9
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 4.3e-238 828.9 1049 47.0
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.4e-225 787.3 1106 43.6
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 3.1e-212 743.0 1075 41.5
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 5.9e-211 738.8 1055 43.2
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.2e-209 731.9 825 51.8
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.0e-191 673.3 659 54.2
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.2e-191 672.5 658 54.1
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.4e-188 664.5 614 55.7
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 5.6e-185 652.5 629 55.2
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 2.9e-181 640.2 795 47.2
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 5.4e-172 609.4 669 50.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 4.0e-159 566.6 533 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 5.4e-156 556.2 948 37.8
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 6.6e-154 549.3 491 58.0
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 2.4e-151 540.8 872 38.1
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.2e-150 538.5 930 35.2
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.9e-132 478.0 1112 33.7
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.9e-132 478.0 1112 33.7
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 7.2e-108 396.4 427 52.9
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 2.0e-102 378.3 1128 29.6
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.8e-98 362.8 416 53.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.8e-42 179.1 181 48.1
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.2e-33 149.8 116 58.6
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 2.4e-26 125.6 279 31.2
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.1e-15 90.1 90 53.3
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.8e-13 82.8 70 54.3
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 3.1e-10 72.0 78 42.3
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 3.4e-09 68.6 48 64.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.8e-08 65.1 42 69.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 1.4e-07 63.2 37 78.4
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 5.5e-07 61.2 37 73.0
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 5.5e-07 61.2 85 32.9
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 1.2e-06 60.1 35 80.0
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 2.1e-06 59.3 66 43.9


User provided reference genes

Program Settings