Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.3e-274 948.3 513 100.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.8e-194 682.9 646 61.9
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 3.6e-182 642.1 680 56.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.5e-172 610.1 572 59.1
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 6.2e-166 588.2 616 53.9
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 4.4e-164 582.0 616 53.2
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.1e-161 573.2 618 52.8
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.5e-161 572.4 618 52.8
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 3.5e-161 572.4 617 53.0
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 2.3e-160 569.7 616 51.6
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 3.6e-158 562.4 617 53.3
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 2.0e-156 556.6 625 50.9
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.7e-155 553.5 617 52.0
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 6.4e-155 551.6 635 50.2
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.4e-154 550.4 615 53.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.7e-153 546.2 616 52.6
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 3.9e-152 542.3 608 54.6
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 5.1e-152 542.0 616 52.4
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.2e-150 537.3 612 52.1
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.6e-150 535.8 564 53.2
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 6.2e-150 535.0 657 49.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.8e-149 533.5 616 51.5
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.4e-149 533.1 615 52.5
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.0e-149 532.3 638 50.5
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 5.2e-149 531.9 612 50.3
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 6.8e-149 531.6 568 52.1
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 6.8e-149 531.6 614 50.3
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.5e-148 530.4 615 52.4
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.6e-148 529.6 612 50.2
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.8e-148 528.5 615 52.2
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.9e-148 527.7 614 49.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.9e-148 527.7 614 49.7
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.3e-147 527.3 616 50.8
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-147 526.9 613 52.0
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.7e-147 526.9 656 47.6
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 6.4e-147 525.0 616 51.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.1e-146 524.2 620 50.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.2e-146 522.3 535 54.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 4.2e-146 522.3 626 49.0
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 9.3e-146 521.2 636 49.7
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.1e-145 520.0 611 49.4
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.7e-144 516.9 611 51.1
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 8.7e-144 514.6 611 49.1
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 8.7e-144 514.6 609 50.4
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 8.7e-144 514.6 622 51.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 9.6e-143 511.1 620 48.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.6e-142 510.4 525 54.1
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.0e-141 505.8 611 49.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 9.0e-141 504.6 611 49.8
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.6e-140 503.1 614 48.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.2e-139 500.0 614 48.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 4.9e-139 498.8 619 48.3
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.4e-138 497.3 613 50.2
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 4.2e-138 495.7 543 53.8
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 5.4e-138 495.4 613 49.8
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.7e-136 490.3 614 48.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.9e-136 489.2 614 48.2
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.9e-136 489.2 608 49.5
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 6.6e-136 488.4 614 47.1
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 8.7e-136 488.0 619 48.8
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.1e-135 487.6 594 48.5
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 4.3e-135 485.7 626 47.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 7.4e-135 485.0 611 49.9
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 9.6e-135 484.6 614 46.6
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.6e-134 482.6 613 49.3
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 6.2e-134 481.9 650 46.6
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.2e-134 481.9 612 49.0
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 8.1e-134 481.5 615 47.8
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 9.9e-132 474.6 368 65.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 9.9e-132 474.6 611 48.0
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.1e-130 471.1 582 48.3
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.1e-130 471.1 575 48.3
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.0e-128 464.5 612 46.7
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 6.7e-128 461.8 613 47.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 7.4e-127 458.4 613 46.8
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 3.7e-126 456.1 612 46.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.1e-125 453.0 566 49.1
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 5.3e-125 452.2 612 46.6
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 5.3e-125 452.2 366 64.5
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 4.2e-122 442.6 622 44.7
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-121 439.9 387 61.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.8e-120 437.2 624 44.9
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.0e-120 436.4 362 63.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 3.3e-119 433.0 511 50.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 5.7e-119 432.2 392 57.7
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.1e-118 430.3 614 45.4
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 4.8e-118 429.1 622 44.2
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.8e-117 427.2 634 43.1
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 5.9e-116 422.2 615 45.2
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 5.9e-116 422.2 621 44.3
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 8.7e-112 408.3 619 41.0
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 2.5e-111 406.8 610 44.4
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.4e-106 391.0 639 41.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.1e-98 364.8 507 46.0
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-93 348.2 452 49.1
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.0e-88 330.1 478 42.3
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 4.5e-84 316.2 293 60.8
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 4.8e-78 296.2 614 36.0
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.1e-77 293.1 253 63.6
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 6.5e-75 285.8 625 34.2
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 4.2e-74 283.1 507 41.2
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 3.6e-73 280.0 629 33.2
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.2e-72 276.2 233 61.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.0e-68 264.2 260 60.0
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.9e-66 257.7 238 55.9
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.0e-63 247.7 621 34.1
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 7.3e-58 229.2 316 44.6
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 9.5e-58 228.8 352 40.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.5e-55 221.5 177 66.1
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.3e-54 218.4 364 40.9
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.7e-38 164.9 153 59.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-37 160.6 469 31.8
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.7e-36 157.5 162 53.1
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.0e-35 154.1 126 65.9
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 7.3e-34 149.4 169 55.6
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.4e-29 133.3 174 51.7
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 7.1e-29 132.9 174 51.7
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.2e-28 132.1 109 61.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.7e-28 131.0 172 51.2
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.3e-27 127.9 150 52.0
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.1e-25 119.4 162 48.1
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-21 107.5 122 45.1
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.5e-20 104.0 158 43.0
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.6e-20 103.6 75 61.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-18 98.6 54 79.6
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 3.3e-18 97.4 291 29.2
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.3e-18 97.1 94 52.1
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.4e-18 96.3 76 55.3
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-17 95.5 75 68.0
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 8.4e-14 82.8 65 61.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 3.2e-13 80.9 69 59.4
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 4.2e-13 80.5 49 73.5
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 2.3e-11 74.7 58 58.6
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 5.8e-07 60.1 253 23.3


User provided reference genes

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