Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 5.9e-43 177.2 93 100.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.9e-33 145.6 93 77.4
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 3.3e-33 144.8 93 77.4
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 4.3e-33 144.4 93 78.5
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 4.7e-32 141.0 93 80.6
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 1.8e-31 139.0 93 76.3
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.3e-29 132.9 91 73.6
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.7e-29 132.5 93 73.1
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 4.9e-29 131.0 93 75.3
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 6.4e-29 130.6 93 72.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.9e-28 129.0 93 71.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 3.2e-28 128.3 93 71.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 3.2e-28 128.3 93 74.2
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.2e-28 128.3 93 75.3
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.2e-28 128.3 93 75.3
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 5.4e-28 127.5 93 72.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 5.4e-28 127.5 93 71.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.1e-27 125.6 93 67.7
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 2.7e-27 125.2 93 69.9
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.7e-27 125.2 93 68.8
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.6e-27 124.4 93 68.8
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 4.6e-27 124.4 93 68.8
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 1.0e-26 123.2 93 69.9
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 2.3e-26 122.1 91 71.4
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 2.5e-25 118.6 93 67.7
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 9.5e-25 116.7 93 68.8
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 9.5e-25 116.7 93 68.8
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.1e-24 115.5 93 66.7
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 3.6e-24 114.8 93 64.5
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 6.2e-24 114.0 93 64.5
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 8.1e-24 113.6 93 65.6
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 8.1e-24 113.6 93 65.6
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 8.1e-24 113.6 93 64.5
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 1.1e-23 113.2 93 66.7
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 1.1e-23 113.2 93 66.7
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.4e-23 112.8 93 64.5
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 3.1e-23 111.7 93 65.6
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 3.1e-23 111.7 93 65.6
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 3.1e-23 111.7 92 65.2
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 4.0e-23 111.3 91 63.7
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.5e-22 109.4 93 63.4
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 1.5e-22 109.4 93 64.5
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 3.4e-22 108.2 79 70.9
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.3e-21 106.3 93 62.4
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.3e-21 106.3 93 62.4
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.9e-21 105.1 93 61.3
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 6.4e-21 104.0 93 62.4
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 8.4e-21 103.6 93 64.5
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 8.4e-21 103.6 93 61.3
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 8.4e-21 103.6 93 61.3
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.1e-20 103.2 93 60.2
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 1.1e-20 103.2 91 61.5
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.9e-20 102.4 93 60.2
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 5.4e-20 100.9 93 59.1
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 9.2e-20 100.1 93 60.2
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.6e-19 99.4 93 59.1
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.6e-19 99.4 93 58.1
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.6e-19 99.4 93 61.3
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 2.7e-19 98.6 93 59.1
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 3.5e-19 98.2 93 65.6
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 7.8e-19 97.1 93 57.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.0e-18 96.7 95 57.9
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.0e-18 96.7 93 57.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.3e-18 96.3 94 58.5
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 1.7e-18 95.9 124 46.8
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 3.0e-18 95.1 95 57.9
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 8.6e-18 93.6 99 56.6
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.1e-17 93.2 93 57.0
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 1.5e-17 92.8 93 55.9
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.5e-17 92.8 93 54.8
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.9e-17 92.4 87 59.8
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.5e-17 92.0 62 67.7
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 2.5e-17 92.0 95 55.8
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 3.3e-17 91.7 65 64.6
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.2e-16 89.7 91 53.8
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 2.1e-16 89.0 93 57.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 6.2e-16 87.4 102 52.9
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 6.2e-16 87.4 102 52.9
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 1.1e-15 86.7 94 59.6
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 3.1e-15 85.1 86 57.0
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 3.1e-15 85.1 86 57.0
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 3.1e-15 85.1 86 57.0
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 4.0e-15 84.7 95 52.6
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.2e-14 83.2 94 57.4
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 3.4e-14 81.6 98 55.1
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 7.6e-14 80.5 93 53.8
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 1.7e-13 79.3 91 54.9
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 8.4e-13 77.0 94 55.3
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 8.4e-13 77.0 86 53.5
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 8.4e-13 77.0 46 80.4
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.1e-12 76.6 93 51.6
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.1e-12 76.6 93 51.6
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 1.1e-12 76.6 98 52.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 5.4e-12 74.3 98 50.0
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 5.4e-12 74.3 98 49.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.1e-11 72.4 93 51.6
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 7.8e-11 70.5 88 52.3
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.8e-11 70.5 61 63.9
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.3e-10 69.7 85 55.3
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.7e-10 69.3 41 73.2
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 5.1e-10 67.8 43 69.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 6.6e-10 67.4 93 48.4
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.9e-09 65.9 41 73.2
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 5.6e-09 64.3 41 70.7
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 7.3e-09 63.9 58 53.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.3e-08 63.2 41 70.7
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.6e-08 62.8 61 59.0
TPR.G22880 Trifolium pratense HOM05D006995 ORTHO05D008870 1.6e-08 62.8 52 71.2
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 2.8e-08 62.0 53 64.2
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 4.8e-08 61.2 80 50.0
CBR_g45542 Chara braunii HOM05D006995 ORTHO05D008870 6.9e-07 57.4 71 50.7
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 7.6e-06 53.9 30 76.7
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 7.6e-06 53.9 30 76.7
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 9.9e-06 53.5 41 63.4


User provided reference genes

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