Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 6.6e-135 484.2 272 100.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-108 396.0 266 76.7
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 6.9e-108 394.4 273 76.2
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 5.9e-99 364.8 288 75.3
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.0e-98 364.0 279 77.1
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.2e-97 359.0 274 76.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 7.9e-96 354.4 294 69.7
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.0e-95 354.0 294 69.7
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.6e-94 349.4 274 67.5
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.7e-93 346.7 282 70.9
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.2e-93 346.3 268 73.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 4.8e-93 345.1 303 70.3
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 3.1e-92 342.4 280 72.9
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 5.3e-92 341.7 287 72.1
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.5e-91 339.0 244 73.0
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.5e-91 339.0 243 76.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 3.5e-91 339.0 246 72.4
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 4.5e-91 338.6 240 77.1
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 4.5e-91 338.6 240 77.1
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 5.0e-90 335.1 303 61.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.5e-89 333.6 246 72.0
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.5e-89 332.8 303 67.7
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 5.5e-89 331.6 215 76.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 9.4e-89 330.9 260 73.1
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 9.4e-89 330.9 277 69.0
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.6e-88 330.1 212 77.4
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 6.1e-88 328.2 284 70.4
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 6.1e-88 328.2 288 70.1
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.8e-87 326.6 287 72.1
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 3.0e-87 325.9 294 68.4
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 8.8e-87 324.3 257 67.7
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.1e-86 323.9 215 81.9
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.1e-86 323.9 291 69.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.0e-86 323.2 246 70.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.0e-86 323.2 291 69.4
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.0e-86 323.2 248 67.3
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.0e-86 323.2 236 69.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 5.7e-86 321.6 248 74.6
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 5.7e-86 321.6 313 58.1
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 7.5e-86 321.2 298 61.4
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 9.7e-86 320.9 291 69.4
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.3e-85 320.5 219 74.0
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 4.8e-85 318.5 214 85.0
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.2e-85 317.8 240 75.0
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 8.2e-85 317.8 288 68.4
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-84 317.4 240 75.4
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.1e-84 317.4 235 77.0
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.1e-84 317.4 288 68.1
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.1e-84 317.4 296 67.6
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.4e-84 317.0 246 66.7
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 3.1e-84 315.8 266 63.2
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 3.1e-84 315.8 240 67.1
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.1e-84 315.5 237 68.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 4.1e-84 315.5 297 67.3
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.1e-84 315.5 277 68.6
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 7.0e-84 314.7 266 66.5
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 7.0e-84 314.7 306 64.7
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.2e-83 313.9 214 84.1
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.0e-83 313.2 232 76.3
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 5.9e-83 311.6 266 61.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.0e-82 310.8 292 63.4
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 2.2e-82 309.7 287 66.9
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 3.8e-82 308.9 232 68.1
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 1.1e-81 307.4 270 61.9
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.5e-81 306.2 287 66.6
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 4.2e-81 305.4 278 66.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.2e-81 305.4 278 66.9
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 5.5e-81 305.1 283 61.1
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 7.2e-81 304.7 288 66.0
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 9.4e-81 304.3 213 79.3
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.1e-80 303.1 255 69.0
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.6e-80 302.4 278 66.5
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 6.1e-80 301.6 236 73.7
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 4.0e-79 298.9 214 69.6
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.8e-79 298.1 292 57.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 7.5e-78 294.7 277 67.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.7e-77 292.4 215 70.7
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 5.4e-76 288.5 291 58.4
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.1e-76 287.7 194 72.7
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.6e-75 287.0 244 65.6
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 2.0e-75 286.6 219 75.8
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.0e-74 284.3 240 66.7
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.3e-74 283.9 273 61.9
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.2e-74 283.1 240 71.7
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.5e-73 280.4 239 58.2
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 5.5e-73 278.5 293 55.3
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.2e-72 277.3 216 64.8
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.6e-72 275.8 212 70.3
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 4.7e-72 275.4 201 72.1
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.2e-70 270.8 220 65.5
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.0e-70 270.0 234 64.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 4.4e-70 268.9 242 62.8
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 9.8e-70 267.7 238 57.1
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.2e-69 266.5 253 67.2
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.4e-68 263.1 142 87.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 3.1e-68 262.7 217 63.1
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.0e-67 260.0 211 62.1
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.0e-66 257.7 207 61.8
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 5.6e-65 251.9 239 65.7
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.0e-63 247.7 296 50.7
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.4e-63 247.3 228 71.1
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 7.5e-62 241.5 223 59.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-60 237.3 235 55.3
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.5e-54 217.2 118 87.3
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.8e-51 204.9 248 54.4
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 3.9e-50 202.6 227 62.6
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.1e-47 194.5 153 67.3
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.6e-38 163.3 134 61.9
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.2e-30 137.9 192 41.1
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.9e-29 133.3 204 48.5
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-29 133.3 179 47.5
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 5.3e-23 112.5 73 75.3
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 3.4e-22 109.8 111 58.6
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.4e-21 105.1 76 68.4
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.1e-20 104.8 164 57.9
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.4e-20 104.4 88 64.8
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 4.2e-20 102.8 127 48.8
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 8.7e-18 95.1 115 48.7
SalBow6G2479 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.4e-17 92.0 82 64.6
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 9.6e-17 91.7 133 38.3
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.4e-15 87.8 117 47.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 3.1e-15 86.7 107 43.0
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 5.8e-14 82.4 56 69.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 7.9e-11 72.0 137 38.0
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.3e-10 70.5 56 67.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.3e-08 64.7 136 33.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.6e-08 64.3 151 33.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.1e-08 63.9 135 32.6
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.7e-08 63.2 112 34.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.8e-08 62.8 138 32.6
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.8e-08 62.8 112 34.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.1e-08 62.0 112 33.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 8.1e-08 62.0 145 34.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.1e-07 61.6 112 40.2
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.1e-07 61.6 31 87.1
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.4e-07 61.2 137 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-07 60.8 137 33.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.0e-07 59.7 137 33.6
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 5.3e-07 59.3 141 31.9
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 5.3e-07 59.3 112 34.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.3e-07 59.3 116 31.9
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.0e-07 58.5 101 36.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 9.0e-07 58.5 139 31.7
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.2e-06 58.2 112 32.1
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.5e-06 57.8 137 31.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.6e-06 57.0 136 32.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.6e-06 57.0 134 30.6
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.5e-06 56.2 112 31.2
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.8e-06 55.8 112 35.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.8e-06 55.8 136 29.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 5.8e-06 55.8 112 33.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 7.6e-06 55.5 139 33.1
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 7.6e-06 55.5 136 32.4


User provided reference genes

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