Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 3.3e-46 188.3 118 100.0
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 9.9e-19 97.1 51 88.2
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 6.4e-18 94.4 49 87.8
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 8.4e-18 94.0 47 91.5
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.1e-17 93.6 47 89.4
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 9.3e-17 90.5 65 64.6
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 9.3e-17 90.5 81 58.0
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.3e-15 86.7 65 64.6
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 1.3e-15 86.7 65 63.1
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 1.3e-15 86.7 65 63.1
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.8e-15 86.3 64 65.6
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 3.0e-15 85.5 65 63.1
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.0e-15 85.5 65 63.1
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 3.9e-15 85.1 65 63.1
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 3.9e-15 85.1 65 63.1
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 3.9e-15 85.1 65 63.1
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.5e-14 83.2 50 80.0
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.5e-14 82.4 65 61.5
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 3.3e-14 82.0 111 41.4
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.3e-14 81.6 65 58.5
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 4.3e-14 81.6 65 60.0
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.6e-14 81.3 77 53.2
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 5.6e-14 81.3 65 61.5
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 7.4e-14 80.9 85 55.3
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 7.4e-14 80.9 73 63.0
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 9.6e-14 80.5 42 83.3
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.3e-13 80.1 48 75.0
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 1.6e-13 79.7 43 86.0
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.6e-13 79.7 43 81.4
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.6e-13 79.7 43 81.4
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.6e-13 79.7 43 81.4
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 2.1e-13 79.3 50 74.0
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 2.8e-13 79.0 46 76.1
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 2.8e-13 79.0 46 76.1
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 3.7e-13 78.6 78 53.8
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.7e-13 78.6 83 54.2
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.7e-13 78.6 83 54.2
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 3.7e-13 78.6 41 85.4
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 4.8e-13 78.2 44 84.1
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.8e-13 78.2 45 77.8
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.8e-13 78.2 45 77.8
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 4.8e-13 78.2 45 77.8
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 4.8e-13 78.2 83 61.4
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 4.8e-13 78.2 65 64.6
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 86.0
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 86.0
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 6.2e-13 77.8 45 75.6
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 81.4
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 81.4
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 6.2e-13 77.8 83 50.6
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 81.4
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 6.2e-13 77.8 43 81.4
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 6.2e-13 77.8 51 74.5
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 8.1e-13 77.4 50 74.0
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 8.1e-13 77.4 48 77.1
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 1.1e-12 77.0 44 77.3
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 1.1e-12 77.0 42 76.2
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.1e-12 77.0 42 81.0
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.1e-12 77.0 44 77.3
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 1.1e-12 77.0 41 82.9
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.4e-12 76.6 83 51.8
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 1.8e-12 76.3 45 73.3
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 3.1e-12 75.5 105 46.7
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 3.1e-12 75.5 38 84.2
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 4.0e-12 75.1 44 72.7
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 4.0e-12 75.1 44 72.7
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 5.3e-12 74.7 86 50.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 6.9e-12 74.3 119 40.3
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.2e-11 73.6 40 77.5
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.0e-11 72.8 49 69.4
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 2.6e-11 72.4 47 72.3
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 3.4e-11 72.0 44 75.0
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 3.4e-11 72.0 46 73.9
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 5.8e-11 71.2 45 73.3
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 5.8e-11 71.2 38 78.9
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 7.6e-11 70.9 49 67.3
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 7.6e-11 70.9 38 81.6
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 7.6e-11 70.9 34 88.2
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.3e-10 70.1 54 63.0
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 2.2e-10 69.3 72 50.0
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.2e-10 69.3 34 88.2
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.2e-10 69.3 34 85.3
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 2.2e-10 69.3 32 90.6
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.2e-10 69.3 32 90.6
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.9e-10 68.9 81 50.6
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 2.9e-10 68.9 76 65.8
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 2.9e-10 68.9 34 85.3
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 2.9e-10 68.9 35 80.0
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 4.9e-10 68.2 32 87.5
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 8.4e-10 67.4 70 48.6
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.4e-09 66.6 41 75.6
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.4e-09 66.6 38 73.7
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 3.2e-09 65.5 35 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 9.3e-09 63.9 43 74.4
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.2e-08 63.5 42 73.8
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 2.1e-08 62.8 64 43.8
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.0e-07 58.9 41 65.9
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 5.1e-07 58.2 61 52.5
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 5.1e-07 58.2 61 52.5
Gohir.A05G410800 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.1e-06 57.0 39 74.4
Gohir.D04G005100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.1e-06 57.0 39 74.4
Gorai.012G006400 Gossypium raimondii HOM05D006246 ORTHO05D007932 1.1e-06 57.0 39 74.4
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 1.5e-06 56.6 50 56.0
Nn5g27268 Nelumbo nucifera HOM05D006246 ORTHO05D007932 2.5e-06 55.8 50 54.0
C04p19050 Brassica napus HOM05D006246 ORTHO05D007932 9.6e-06 53.9 49 55.1


User provided reference genes

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