Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.9e-184 647.1 315 100.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.7e-140 501.5 315 76.8
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.3e-139 499.2 305 78.0
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.1e-138 496.9 320 76.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.5e-138 496.5 315 77.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.6e-132 476.5 305 73.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.8e-131 473.0 306 74.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 5.2e-131 471.5 312 74.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-130 469.5 306 72.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.8e-129 464.9 316 71.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 6.3e-129 464.5 310 72.6
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.1e-128 461.8 309 72.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 4.1e-128 461.8 307 73.3
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 7.0e-128 461.1 313 71.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.0e-127 459.5 308 71.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.5e-127 458.4 314 70.7
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 5.9e-127 458.0 311 69.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.3e-126 456.8 314 69.4
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.7e-126 456.4 312 69.9
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.5e-126 454.5 303 73.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.9e-125 453.0 305 71.5
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.2e-125 452.2 314 68.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.2e-125 452.2 356 64.6
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 4.2e-125 451.8 305 71.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 9.4e-125 450.7 312 69.2
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.2e-124 450.3 308 70.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.6e-124 449.9 311 68.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.7e-124 449.1 312 68.6
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 4.7e-124 448.4 305 69.5
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 4.7e-124 448.4 314 68.8
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 6.1e-124 448.0 308 68.8
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.8e-123 446.4 308 68.2
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.8e-123 444.5 342 65.2
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.0e-122 443.0 312 67.9
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.6e-122 442.6 312 67.9
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 9.8e-122 440.7 315 66.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.8e-122 440.7 315 66.7
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 9.8e-122 440.7 311 65.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.8e-122 440.7 312 68.3
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.3e-121 440.3 305 68.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.7e-121 439.9 315 68.6
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-121 439.5 312 67.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.8e-121 439.1 337 65.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.8e-121 439.1 337 65.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.8e-121 439.1 395 58.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 3.7e-121 438.7 303 69.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 4.8e-121 438.3 372 60.8
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 6.3e-121 438.0 307 67.4
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 6.3e-121 438.0 307 67.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.1e-120 435.6 312 67.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.2e-119 433.7 288 72.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.5e-119 432.2 303 68.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 4.5e-119 431.8 305 68.5
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.5e-119 431.8 307 67.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.5e-119 431.8 307 67.4
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.9e-119 431.4 306 67.3
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.0e-118 430.6 303 66.3
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.3e-118 430.3 308 67.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.7e-118 429.9 309 67.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 5.0e-118 428.3 307 66.4
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.0e-118 428.3 309 65.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 5.0e-118 428.3 305 67.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.9e-117 426.4 308 69.2
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 3.2e-117 425.6 308 66.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.2e-117 425.6 305 67.5
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.2e-117 425.6 296 71.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 7.2e-117 424.5 310 67.1
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.2e-117 424.5 305 66.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 9.5e-117 424.1 269 75.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.6e-116 423.3 306 66.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 3.6e-116 422.2 314 65.6
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 6.1e-116 421.4 316 64.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.0e-115 420.6 306 66.3
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-115 420.6 277 73.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.4e-115 420.2 307 65.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-115 420.2 292 68.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 4.0e-115 418.7 314 65.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 4.0e-115 418.7 314 65.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 8.8e-115 417.5 355 59.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.3e-113 413.7 314 64.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.7e-113 413.3 290 68.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-113 413.3 310 66.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.9e-113 411.8 309 65.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 6.3e-113 411.4 314 64.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.4e-112 410.2 314 64.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.1e-112 408.7 308 64.9
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.1e-112 408.7 289 69.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.2e-112 407.5 289 67.1
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.2e-111 407.1 353 60.9
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.1e-109 400.6 260 71.9
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.1e-108 394.8 293 65.2
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.4e-107 393.7 313 60.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.8e-106 387.5 260 70.8
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.4e-104 382.9 250 73.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.1e-101 374.0 310 58.4
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 5.2e-99 365.2 293 61.4
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.2e-98 364.0 250 68.8
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.2e-96 355.9 306 58.8
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.0e-95 353.2 310 58.4
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.0e-95 353.2 306 60.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.0e-94 350.9 321 55.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.0e-94 350.9 210 74.3
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-94 349.4 312 57.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 3.0e-94 349.4 320 58.4
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.9e-94 349.0 316 58.5
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-93 347.4 319 55.8
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-92 344.0 314 57.3
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-91 340.9 319 59.2
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.8e-91 340.1 230 69.6
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.8e-91 340.1 319 58.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.2e-91 338.6 314 58.3
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.8e-90 335.1 316 58.2
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.2e-89 333.2 289 58.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 9.2e-88 327.8 337 54.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-86 323.6 309 54.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.3e-86 323.2 276 60.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.1e-83 312.8 240 61.2
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 5.8e-82 308.5 317 55.2
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 7.6e-82 308.1 287 55.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 6.4e-81 305.1 238 62.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.1e-80 304.3 389 46.3
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 8.1e-76 288.1 272 54.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.0e-74 283.5 245 57.6
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.6e-69 264.6 310 43.9
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.4e-67 260.0 315 44.8
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 6.9e-67 258.5 155 78.7
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.9e-65 253.1 301 44.2
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.8e-65 252.7 311 43.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.4e-64 250.0 305 44.9
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.2e-56 223.0 162 67.3
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.2e-55 221.1 245 49.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.5e-53 214.2 134 71.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.2e-48 196.1 113 82.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.6e-47 194.1 160 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.0e-46 191.4 254 39.8
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.7e-46 188.3 258 41.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 5.7e-45 185.7 310 39.4
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.6e-44 184.1 245 41.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.2e-44 183.7 204 44.6
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 2.7e-39 166.8 236 41.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.9e-37 160.6 264 37.9
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 5.9e-34 149.1 88 76.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.1e-31 140.6 268 32.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.7e-31 140.2 281 32.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.0e-29 134.0 376 28.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-27 127.5 75 80.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-27 127.5 75 80.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.1e-27 126.3 75 78.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.1e-27 125.2 303 28.1
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.5e-26 124.4 310 31.3
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.4e-24 117.9 237 31.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.8e-22 110.9 303 27.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-22 109.4 113 43.4
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.8e-22 108.6 83 65.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.6e-21 107.1 103 43.7
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.8e-20 103.6 153 38.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 4.5e-18 96.3 212 31.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.0e-17 92.8 291 25.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.9e-16 90.9 260 26.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.7e-15 86.3 60 63.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.8e-11 74.3 80 48.8
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.0e-09 68.6 95 43.2
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.0e-09 66.2 69 47.8


User provided reference genes

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