Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-228 796.2 405 100.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.7e-164 582.4 412 71.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.0e-160 568.5 414 71.5
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 5.0e-155 551.6 411 68.9
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 5.4e-149 531.6 412 66.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.6e-148 528.5 395 67.3
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.0e-144 515.4 391 67.0
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 5.2e-144 515.0 489 58.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.4e-143 512.3 413 64.2
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.1e-141 507.3 411 63.0
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.9e-141 506.5 413 63.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 9.2e-141 504.2 374 67.1
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 9.2e-141 504.2 407 64.4
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-140 503.8 413 63.7
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.6e-140 503.4 419 65.2
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.1e-140 503.1 411 63.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.1e-140 503.1 413 63.7
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.5e-140 502.3 415 64.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.6e-140 501.9 413 63.0
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 6.0e-140 501.5 354 68.1
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.3e-139 499.6 409 65.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.1e-138 497.3 347 70.9
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.1e-137 493.0 362 67.1
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.7e-137 491.9 403 62.5
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-136 490.7 413 62.2
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.4e-136 489.6 357 67.2
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.2e-136 488.4 408 63.7
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.2e-135 487.3 328 72.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.6e-135 486.1 360 65.6
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.4e-135 485.7 358 66.2
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.4e-135 485.3 356 66.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.4e-135 485.3 344 68.6
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.8e-135 485.0 410 61.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.7e-134 483.4 338 68.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 8.4e-134 481.1 343 70.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.1e-133 480.7 358 66.5
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.9e-133 479.9 321 71.7
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.4e-133 479.6 356 65.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.2e-133 478.8 345 67.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.4e-133 478.4 356 65.4
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.1e-133 478.0 338 68.3
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 7.1e-133 478.0 338 68.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.3e-133 477.6 345 66.7
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.2e-132 477.2 395 62.0
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-132 477.2 408 60.5
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.8e-132 474.6 338 67.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.3e-131 473.8 403 61.3
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.3e-131 473.0 394 61.2
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.9e-131 472.2 411 59.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.5e-130 470.3 386 63.7
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 3.6e-129 465.7 318 72.0
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 4.8e-129 465.3 339 68.1
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.8e-129 465.3 344 64.5
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 8.1e-129 464.5 338 67.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-128 464.2 323 70.0
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-128 464.2 318 71.7
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-128 464.2 318 71.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.8e-128 463.4 360 65.6
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.8e-128 463.4 342 65.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.4e-128 463.0 342 65.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 5.3e-128 461.8 410 59.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 6.9e-128 461.5 338 66.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 6.9e-128 461.5 399 58.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 9.0e-128 461.1 345 66.7
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.2e-127 460.7 378 61.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.5e-127 460.3 316 69.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.4e-127 459.1 316 70.3
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.4e-127 459.1 405 58.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.8e-127 458.4 346 63.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.7e-126 456.8 346 63.3
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.2e-126 456.4 357 61.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 2.9e-126 456.1 344 63.7
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.8e-126 455.7 410 57.8
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 4.9e-126 455.3 346 65.3
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.9e-126 455.3 332 67.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 6.4e-126 454.9 330 67.0
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.1e-125 454.1 346 65.3
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-125 453.8 346 65.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.4e-125 453.8 346 65.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 3.2e-125 452.6 346 62.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.2e-125 452.6 346 64.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.4e-125 451.8 346 64.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 7.1e-125 451.4 344 64.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.1e-124 449.9 337 66.8
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.1e-124 449.9 403 58.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.5e-124 449.1 350 62.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.0e-123 446.0 393 58.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.1e-122 444.1 342 65.5
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.3e-122 442.6 353 61.8
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.4e-122 441.4 306 68.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 4.8e-121 438.7 327 67.3
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-120 437.2 322 65.5
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.1e-120 436.0 322 65.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 6.9e-120 434.9 344 61.9
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 6.9e-120 434.9 344 61.9
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-119 434.1 322 64.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.3e-115 420.6 373 60.1
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 8.7e-115 417.9 363 61.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.3e-113 414.1 286 71.7
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.8e-113 412.9 339 62.5
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 6.9e-112 408.3 346 58.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.2e-110 403.3 620 41.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 9.3e-109 397.9 319 61.8
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.1e-108 396.7 297 67.7
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.5e-108 396.0 327 58.7
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.3e-107 394.0 268 70.5
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.8e-107 393.7 277 69.3
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 9.7e-106 387.9 278 70.1
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 2.7e-100 369.8 291 64.9
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.1e-96 355.9 298 58.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-94 350.5 317 53.0
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.2e-93 346.3 263 62.0
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.6e-90 336.7 367 47.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 7.4e-90 335.1 346 54.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.8e-89 333.2 316 51.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.9e-86 323.2 339 49.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-85 321.2 321 50.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 3.0e-83 313.2 293 59.0
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.2e-83 312.4 279 60.6
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.8e-81 305.8 220 62.3
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 7.0e-80 302.0 216 66.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.3e-73 278.9 291 54.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.2e-73 278.5 266 54.1
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.7e-70 270.8 171 74.9
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.4e-69 265.0 247 59.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 3.1e-64 250.0 204 65.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 7.0e-64 248.8 197 64.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.0e-59 233.0 245 49.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.1e-52 210.7 225 52.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.7e-41 174.5 159 59.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 4.9e-41 172.9 119 63.9
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.3e-38 164.1 330 33.3
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.3e-37 159.8 147 53.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.4e-32 144.1 76 89.5
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 4.1e-32 143.3 280 32.9
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 9.2e-32 142.1 92 70.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.7e-31 140.6 303 31.7
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 3.9e-22 110.2 103 46.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.0e-18 97.8 78 66.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.7e-15 87.4 139 38.1
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.3e-13 79.3 137 42.3
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 5.3e-11 73.2 187 26.2


User provided reference genes

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