Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 4.8e-68 261.2 142 100.0
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 9.4e-24 114.0 119 56.3
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 1.3e-20 103.6 109 53.2
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 7.7e-18 94.4 121 47.9
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.0e-17 94.0 89 58.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 6.5e-17 91.3 119 47.9
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.5e-17 91.3 113 48.7
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 9.5e-16 87.4 77 57.1
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 9.5e-16 87.4 77 57.1
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.2e-15 87.0 91 52.7
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.1e-15 86.3 115 48.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 3.6e-15 85.5 103 49.5
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 6.1e-15 84.7 98 50.0
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.1e-15 84.7 105 44.8
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 8.0e-15 84.3 85 50.6
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.0e-14 84.0 105 46.7
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.0e-14 84.0 89 50.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 2.3e-14 82.8 103 49.5
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 2.3e-14 82.8 103 49.5
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.3e-14 82.8 122 45.1
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.3e-14 82.8 81 51.9
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 5.2e-14 81.6 122 46.7
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.8e-14 81.3 84 50.0
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.8e-14 81.3 84 50.0
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 8.9e-14 80.9 111 52.3
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.2e-13 80.5 112 44.6
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.2e-13 80.5 81 50.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.2e-13 80.5 105 48.6
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.6e-13 79.3 78 56.4
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 3.4e-13 79.0 135 43.0
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 3.4e-13 79.0 81 49.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.7e-13 78.2 130 40.0
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.5e-13 77.8 99 45.5
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 7.5e-13 77.8 85 44.7
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 9.8e-13 77.4 82 51.2
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.7e-12 76.6 143 39.2
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 2.2e-12 76.3 106 48.1
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.2e-12 76.3 87 54.0
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.8e-12 75.9 122 44.3
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 2.8e-12 75.9 84 48.8
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.7e-12 75.5 112 43.8
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 3.7e-12 75.5 99 43.4
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.9e-12 75.1 83 47.0
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 4.9e-12 75.1 85 44.7
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 4.9e-12 75.1 110 41.8
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 8.3e-12 74.3 98 46.9
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 8.3e-12 74.3 95 42.1
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.1e-11 73.9 79 55.7
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 1.4e-11 73.6 88 46.6
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.4e-11 73.6 116 43.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.8e-11 73.2 83 49.4
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.4e-11 72.8 110 41.8
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 2.4e-11 72.8 107 46.7
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.1e-11 72.4 81 53.1
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 4.1e-11 72.0 83 42.2
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.0e-11 71.2 85 45.9
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 7.0e-11 71.2 121 42.1
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 9.2e-11 70.9 86 48.8
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 9.2e-11 70.9 82 53.7
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 9.2e-11 70.9 80 50.0
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.2e-10 70.5 72 55.6
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.6e-10 70.1 92 45.7
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.6e-10 70.1 128 41.4
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.6e-10 70.1 103 42.7
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.0e-10 69.7 83 45.8
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 2.0e-10 69.7 82 51.2
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.7e-10 69.3 89 46.1
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.5e-10 68.9 76 50.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 3.5e-10 68.9 48 75.0
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.5e-10 68.9 84 46.4
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.5e-10 68.9 77 49.4
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.5e-10 68.9 116 41.4
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 4.5e-10 68.6 87 48.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.5e-10 68.6 77 48.1
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 5.9e-10 68.2 84 45.2
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 5.9e-10 68.2 84 45.2
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 7.8e-10 67.8 80 47.5
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 7.8e-10 67.8 83 44.6
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 7.8e-10 67.8 127 36.2
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.0e-09 67.4 85 42.4
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.0e-09 67.4 98 44.9
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 1.0e-09 67.4 70 50.0
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.0e-09 67.4 105 41.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.3e-09 67.0 77 42.9
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 1.3e-09 67.0 67 52.2
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.3e-09 67.0 118 40.7
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.3e-09 67.0 122 39.3
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.7e-09 66.6 76 47.4
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 1.7e-09 66.6 117 39.3
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.3e-09 66.2 121 38.8
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 3.8e-09 65.5 74 51.4
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 3.8e-09 65.5 83 43.4
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.8e-09 65.5 75 48.0
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 3.8e-09 65.5 107 42.1
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 5.0e-09 65.1 84 42.9
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.0e-09 65.1 82 45.1
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.0e-09 65.1 130 39.2
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 8.6e-09 64.3 125 35.2
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 8.6e-09 64.3 84 45.2
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.1e-08 63.9 80 47.5
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.1e-08 63.9 99 41.4
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.5e-08 63.5 82 43.9
SalBow6G1670 Salvia bowleyana HOM05D003899 ORTHO05D003655 1.5e-08 63.5 109 41.3
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.5e-08 63.5 68 47.1
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.9e-08 63.2 62 56.5
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 2.5e-08 62.8 49 63.3
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 2.5e-08 62.8 90 38.9
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.5e-08 62.8 112 36.6
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 3.3e-08 62.4 47 61.7
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 4.3e-08 62.0 86 41.9
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.3e-08 62.0 48 62.5
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 5.6e-08 61.6 76 47.4
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 5.6e-08 61.6 75 45.3
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 7.3e-08 61.2 63 52.4
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 9.5e-08 60.8 89 40.4
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-07 60.5 76 43.4
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.1e-07 59.7 116 36.2
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.1e-07 59.7 70 51.4
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 2.8e-07 59.3 75 38.7
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.8e-07 59.3 68 51.5
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.8e-07 59.3 74 47.3
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.8e-07 59.3 79 45.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 3.6e-07 58.9 47 55.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 3.6e-07 58.9 75 45.3
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.6e-07 58.9 116 36.2
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.7e-07 58.5 65 52.3
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.7e-07 58.5 72 47.2
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.0e-06 57.4 114 35.1
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 1.4e-06 57.0 51 51.0
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 1.4e-06 57.0 77 46.8
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.4e-06 57.0 103 39.8
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-06 57.0 43 62.8
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.8e-06 56.6 77 44.2
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.8e-06 56.6 79 44.3
Sopen06g019720 Solanum pennellii HOM05D003899 ORTHO05D003655 1.8e-06 56.6 112 35.7
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 2.3e-06 56.2 80 43.8
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 2.3e-06 56.2 47 55.3
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 3.0e-06 55.8 73 41.1
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.0e-06 55.5 77 42.9
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 5.2e-06 55.1 81 40.7


User provided reference genes

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