Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03163 Erythranthe guttata HOM05D007760 ORTHO05D008337 9.1e-159 563.5 287 100.0
MSTRG.24243 Avicennia marina HOM05D007760 ORTHO05D008337 6.9e-66 255.0 301 53.5
MSTRG.1190 Avicennia marina HOM05D007760 ORTHO05D008337 1.8e-50 203.8 287 46.3
SalBow8G4233 Salvia bowleyana HOM05D007760 ORTHO05D008337 1.1e-47 194.5 290 47.2
Migut.C00840 Erythranthe guttata HOM05D007760 ORTHO05D008337 2.9e-40 169.9 294 44.2
Oeu046271.1 Olea europaea HOM05D007760 ORTHO05D008337 1.5e-39 167.5 287 43.9
Oeu027538.2 Olea europaea HOM05D007760 ORTHO05D008337 2.7e-38 163.3 284 40.8
SGA_v2.0_scaffold11G05919 Striga asiatica HOM05D007760 ORTHO05D008337 7.5e-36 155.2 289 41.2
SalBow7G2592 Salvia bowleyana HOM05D007760 ORTHO05D008337 7.7e-33 145.2 283 40.3
CSS0044946 Camellia sinensis var. sinensis HOM05D007760 ORTHO05D008337 7.5e-28 128.6 317 36.9
SGA_v2.0_scaffold47G17496 Striga asiatica HOM05D007760 ORTHO05D008337 4.1e-26 122.9 299 35.8
Rhsim06G0021400 Rhododendron simsii HOM05D007760 ORTHO05D008337 4.5e-25 119.4 294 37.1
Solyc04g081480.3 Solanum lycopersicum HOM05D021694 ORTHO05D008337 5.5e-23 112.5 293 33.1
Sopen04g035090 Solanum pennellii HOM05D021694 ORTHO05D008337 2.1e-22 110.5 293 32.8
Nitab4.5_0009651g0030 Nicotiana tabacum HOM05D007760 ORTHO05D008337 4.7e-22 109.4 275 33.5
RhsimUnG0066000 Rhododendron simsii HOM05D007760 ORTHO05D008337 5.2e-21 105.9 306 34.3
SGA_v2.0_scaffold35G14252 Striga asiatica HOM05D007760 ORTHO05D008337 8.9e-21 105.1 155 41.3
Peaxi162Scf00438g00084 Petunia axillaris HOM05D021694 ORTHO05D008337 3.4e-20 103.2 273 37.4
RhsimUnG0065900 Rhododendron simsii HOM05D007760 ORTHO05D008337 7.5e-20 102.1 304 34.5
Dinv39521 Davidia involucrata HOM05D007760 ORTHO05D008337 1.7e-19 100.9 236 36.0
Duzib116G0858 Durio zibethinus HOM05D007760 ORTHO05D008337 4.5e-17 92.8 309 28.8
Phvul.009G017200 Phaseolus vulgaris HOM05D007760 ORTHO05D008337 4.5e-17 92.8 204 36.8
Dinv31848 Davidia involucrata HOM05D007760 ORTHO05D008337 1.3e-16 91.3 294 31.6
Gorai.010G004000 Gossypium raimondii HOM05D007760 ORTHO05D008337 2.3e-16 90.5 275 32.0
Nitab4.5_0000192g0190 Nicotiana tabacum HOM05D021694 ORTHO05D008337 1.1e-15 88.2 279 30.5
Actinidia15424 Actinidia chinensis HOM05D007760 ORTHO05D008337 1.5e-15 87.8 299 33.4
TAR625G0557 Trochodendron aralioides HOM05D007760 ORTHO05D008337 1.5e-15 87.8 318 30.5
Gohir.D06G006700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 5.6e-15 85.9 275 31.3
Rhsim07G0247700 Rhododendron simsii HOM05D007760 ORTHO05D008337 1.2e-14 84.7 202 34.7
Gorai.010G004100 Gossypium raimondii HOM05D007760 ORTHO05D008337 2.8e-14 83.6 281 29.2
Gohir.A06G003800 Gossypium hirsutum HOM05D007760 ORTHO05D008337 3.6e-14 83.2 273 31.5
VMungo1309G0539 Vigna mungo HOM05D007760 ORTHO05D008337 8.0e-14 82.0 211 34.1
Glyma.04G024000 Glycine max HOM05D007760 ORTHO05D008337 1.0e-13 81.6 290 30.7
Thecc.08G044900 Theobroma cacao HOM05D007760 ORTHO05D008337 1.4e-13 81.3 333 29.7
Nitab4.5_0025981g0010 Nicotiana tabacum HOM05D007760 ORTHO05D008337 3.1e-13 80.1 173 36.4
Duzib041G0564 Durio zibethinus HOM05D007760 ORTHO05D008337 5.2e-13 79.3 309 28.5
Gohir.A06G003900 Gossypium hirsutum HOM05D007760 ORTHO05D008337 1.5e-12 77.8 282 29.8
Hund05187 Selenicereus undatus HOM05D030748 ORTHO05D008337 4.4e-12 76.3 307 32.6
SGA_v2.0_scaffold390G50602 Striga asiatica HOM05D007760 ORTHO05D008337 7.5e-12 75.5 115 44.3
Medtr1g025290 Medicago truncatula HOM05D007760 ORTHO05D008337 9.8e-12 75.1 322 27.0
TPR.G20837 Trifolium pratense HOM05D007760 ORTHO05D008337 9.8e-12 75.1 297 29.6
Gohir.D06G006600 Gossypium hirsutum HOM05D007760 ORTHO05D008337 1.3e-11 74.7 285 30.9
Gorai.010G003900 Gossypium raimondii HOM05D007760 ORTHO05D008337 2.9e-11 73.6 284 31.3
Gohir.A06G003700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 3.7e-11 73.2 285 29.8
CAN.G311.33 Capsicum annuum HOM05D021694 ORTHO05D008337 4.9e-11 72.8 148 38.5
Cc10_g01650 Coffea canephora HOM05D007760 ORTHO05D008337 6.4e-11 72.4 222 29.3
MD08G1012900 Malus domestica HOM05D015458 ORTHO05D008337 8.3e-11 72.0 312 26.6
MD15G1011900 Malus domestica HOM05D015458 ORTHO05D008337 8.3e-11 72.0 219 29.7
Medtr1g025310 Medicago truncatula HOM05D007760 ORTHO05D008337 1.4e-10 71.2 187 31.0
Manes.18G013300 Manihot esculenta HOM05D007760 ORTHO05D008337 2.4e-10 70.5 315 28.6
Psat6g002560 Pisum sativum HOM05D007760 ORTHO05D008337 2.4e-10 70.5 254 30.7
vmacro22892 Vaccinium macrocarpon HOM05D007760 ORTHO05D008337 3.2e-10 70.1 311 30.9
Eucgr.F00585 Eucalyptus grandis HOM05D007760 ORTHO05D008337 7.0e-10 68.9 172 33.1
MBI05_g33714_MAGBIO Magnolia biondii HOM05D007760 ORTHO05D008337 1.6e-09 67.8 300 30.3
TAR381G0719 Trochodendron aralioides HOM05D007760 ORTHO05D008337 1.6e-09 67.8 176 33.5
Sc15g0004960 Simmondsia chinensis HOM05D007760 ORTHO05D008337 2.0e-09 67.4 275 29.5
Cpa.g.sc26.48 Carica papaya HOM05D007760 ORTHO05D008337 2.7e-09 67.0 168 34.5
Cfa013954 Carpinus fangiana HOM05D007760 ORTHO05D008337 2.7e-09 67.0 282 30.9
Ciclev10001832m.g Citrus clementina HOM05D007760 ORTHO05D008337 2.7e-09 67.0 306 27.8
CiPaw.07G149400 Carya illinoinensis HOM05D007760 ORTHO05D008337 3.5e-09 66.6 166 36.7
Glyma.06G024200 Glycine max HOM05D007760 ORTHO05D008337 4.6e-09 66.2 299 29.8
Potri.005G239800 Populus trichocarpa HOM05D007760 ORTHO05D008337 7.8e-09 65.5 178 32.0
ClCG08G014270 Citrullus lanatus HOM05D016278 ORTHO05D008337 1.7e-08 64.3 262 29.0
Lalb_Chr24g0398711 Lupinus albus HOM05D007760 ORTHO05D008337 2.3e-08 63.9 310 29.4
COL.COLO4_26143 Corchorus olitorius HOM05D007760 ORTHO05D008337 3.0e-08 63.5 303 26.7
QL02p011665 Quercus lobata HOM05D007760 ORTHO05D008337 6.6e-08 62.4 229 30.6
ECA233G1679 Erigeron canadensis HOM05D022491 ORTHO05D000476 8.6e-08 62.0 168 30.4
Psat6g002760 Pisum sativum HOM05D007760 ORTHO05D008337 8.6e-08 62.0 155 32.3
Lj1g0003650 Lotus japonicus HOM05D007760 ORTHO05D008337 3.3e-07 60.1 295 27.5
TWI36G1437 Tripterygium wilfordii HOM05D007760 ORTHO05D008337 3.3e-07 60.1 287 27.5
arahy.Tifrunner.gnm1.ann1.EU98QJ Arachis hypogaea HOM05D007760 ORTHO05D008337 4.3e-07 59.7 102 38.2
arahy.Tifrunner.gnm1.ann1.WD1IN2 Arachis hypogaea HOM05D007760 ORTHO05D008337 4.3e-07 59.7 102 38.2
CiPaw.08G066600 Carya illinoinensis HOM05D007760 ORTHO05D008337 4.3e-07 59.7 304 28.3
Sabra05G0185300 Salix brachista HOM05D007760 ORTHO05D008337 4.3e-07 59.7 308 26.3
MELO3C011015.2 Cucumis melo HOM05D016278 ORTHO05D008337 9.5e-07 58.5 294 28.9
FvH4_2g38410 Fragaria vesca HOM05D015458 ORTHO05D008337 9.5e-07 58.5 216 27.3
FAN20G0648 Fragaria x ananassa HOM05D015458 ORTHO05D008337 9.5e-07 58.5 217 27.6
RcHm_v2.0_Chr6g0302891 Rosa chinensis HOM05D015458 ORTHO05D008337 1.6e-06 57.8 77 45.5
Psat6g002640 Pisum sativum HOM05D007760 ORTHO05D008337 2.1e-06 57.4 172 30.2
Actinidia37934 Actinidia chinensis HOM05D068263 ORTHO05D008337 3.6e-06 56.6 255 27.5
Lj4P797T23 Lonicera japonica HOM05D007760 ORTHO05D008337 3.6e-06 56.6 195 30.8
FAN15G2338 Fragaria x ananassa HOM05D015458 ORTHO05D008337 6.2e-06 55.8 242 25.2
FAN27G2463 Fragaria x ananassa HOM05D015458 ORTHO05D008337 6.2e-06 55.8 217 27.2
Psat6g002840 Pisum sativum HOM05D007760 ORTHO05D008337 6.2e-06 55.8 159 31.4
Potri.002G021900 Populus trichocarpa HOM05D007760 ORTHO05D008337 6.2e-06 55.8 188 29.3
Haze_22637 Corylus avellana HOM05D007760 ORTHO05D008337 8.0e-06 55.5 294 28.2
CsaV3_2G029560 Cucumis sativus L. HOM05D016278 ORTHO05D008337 8.0e-06 55.5 290 28.3
Lalb_Chr23g0266151 Lupinus albus HOM05D007760 ORTHO05D008337 8.0e-06 55.5 290 27.2
Prupe.1G364900 Prunus persica HOM05D015458 ORTHO05D008337 8.0e-06 55.5 187 29.9


User provided reference genes

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