Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.3e-156 554.3 277 100.0
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 9.1e-140 500.4 276 88.8
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.5e-131 471.5 275 81.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.3e-130 469.2 276 80.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 82.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.8e-130 468.4 274 81.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.8e-130 468.4 276 81.2
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 5.0e-130 468.0 276 80.8
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 8.6e-130 467.2 277 81.2
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.5e-129 466.5 276 80.4
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.3e-129 465.3 276 79.7
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 81.2
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 9.5e-129 463.8 272 82.7
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 9.5e-129 463.8 270 83.0
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 9.5e-129 463.8 270 82.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.2e-128 463.4 270 82.2
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.6e-128 463.0 277 80.1
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.1e-128 462.6 275 79.3
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.7e-128 461.5 272 78.7
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.7e-128 461.5 272 81.2
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 4.7e-128 461.5 271 80.1
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 6.1e-128 461.1 271 80.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 6.1e-128 461.1 272 81.6
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.0e-127 460.3 276 79.3
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.0e-127 460.3 276 78.6
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.0e-127 460.3 276 79.3
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.0e-127 460.3 272 79.8
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.4e-127 459.9 272 80.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.4e-127 459.9 272 79.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.8e-127 459.5 270 80.7
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.3e-127 459.1 276 78.3
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.3e-127 459.1 271 79.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.3e-127 459.1 270 81.5
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.3e-127 459.1 270 81.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 80.4
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.0e-127 458.4 272 80.1
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 4.0e-127 458.4 271 80.4
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 6.8e-127 457.6 272 80.9
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.9e-127 457.2 275 79.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.9e-127 457.2 275 79.6
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 8.9e-127 457.2 271 79.7
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 8.9e-127 457.2 272 80.5
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 82.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 82.0
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 82.4
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.2e-126 456.8 269 80.7
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.5e-126 456.4 276 78.3
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 80.1
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.5e-126 456.4 272 79.0
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.0e-126 456.1 278 79.5
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.0e-126 456.1 271 80.1
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 2.0e-126 456.1 262 83.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.0e-126 456.1 278 80.2
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 78.6
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.4e-126 455.3 272 81.6
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 3.4e-126 455.3 271 78.2
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.4e-126 454.9 271 79.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 4.4e-126 454.9 271 79.3
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 5.7e-126 454.5 272 81.6
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 5.7e-126 454.5 278 79.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 5.7e-126 454.5 271 79.0
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 7.5e-126 454.1 272 82.0
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 9.8e-126 453.8 278 79.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.3e-125 453.4 272 80.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.3e-125 453.4 271 79.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.7e-125 453.0 271 78.6
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-125 452.2 278 79.1
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 3.7e-125 451.8 278 78.8
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.7e-125 451.8 276 77.9
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.9e-125 451.4 271 79.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 8.3e-125 450.7 271 78.6
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 8.3e-125 450.7 271 77.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 8.3e-125 450.7 271 79.3
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.4e-124 449.9 272 76.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.4e-124 449.1 272 77.9
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 3.5e-123 445.3 245 86.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 4.6e-123 444.9 271 77.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 5.9e-123 444.5 272 77.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.0e-122 443.7 272 77.2
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.0e-122 441.4 272 76.5
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 6.6e-122 441.0 271 77.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.1e-121 440.3 304 72.7
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.9e-121 439.5 306 71.9
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.1e-120 436.0 273 76.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 76.4
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 76.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-119 433.0 271 76.0
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.0e-119 431.8 257 80.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 4.0e-119 431.8 271 75.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.5e-118 427.6 272 75.0
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.2e-116 422.2 276 74.3
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.0e-115 417.9 301 68.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.8e-115 417.5 265 72.5
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.1e-113 413.7 271 69.7
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 3.3e-113 412.1 272 74.6
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 4.3e-113 411.8 272 74.3
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.1e-112 409.5 271 70.1
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.8e-112 409.1 245 79.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.7e-112 408.3 283 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 8.1e-112 407.5 271 69.0
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 6.8e-111 404.4 383 56.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.7e-109 399.8 270 73.7
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.2e-109 399.4 271 68.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 6.2e-104 381.3 272 66.2
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.4e-103 380.2 242 74.4
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 7.6e-102 374.4 226 79.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 2.9e-101 372.5 222 79.7
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.1e-100 367.9 271 62.7
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 3.0e-98 362.5 271 67.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-98 362.1 251 71.3
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 5.8e-94 348.2 271 62.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.4e-92 343.6 221 76.0
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 3.0e-90 335.9 197 81.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 8.7e-90 334.3 275 58.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.8e-87 326.6 291 56.7
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 9.9e-86 320.9 272 61.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 8.4e-85 317.8 271 61.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 3.2e-84 315.8 271 61.3
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.1e-83 313.2 180 82.2
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 6.2e-80 301.6 246 65.4
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.3e-79 298.5 273 57.9
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.6e-75 287.0 168 82.1
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.6e-75 287.0 158 83.5
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 7.9e-75 284.6 276 50.0
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 9.6e-73 277.7 272 53.7
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.7e-69 266.9 152 87.5
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 3.7e-64 249.2 165 74.5
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.5e-60 236.5 209 60.3
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-51 207.6 273 46.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 3.0e-50 203.0 154 66.9
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 8.8e-50 201.4 272 44.9
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.5e-46 190.7 272 45.6
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.1e-43 180.3 171 56.1
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 5.0e-37 159.1 159 57.2
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 9.4e-36 154.8 95 73.7
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 2.8e-32 143.3 185 47.0
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.2e-29 133.7 261 39.8
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.8e-29 132.9 79 77.2
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 5.5e-28 129.0 269 36.4
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.2e-28 128.6 98 62.2
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.8e-24 116.7 135 45.2
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.8e-23 114.0 98 61.2
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.4e-23 113.6 135 44.4
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.6e-19 100.9 73 67.1
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.8e-18 97.4 104 51.9
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 3.3e-12 76.6 45 80.0
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.7e-11 72.8 90 43.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 8.0e-11 72.0 50 68.0
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 3.5e-06 56.6 45 64.4


User provided reference genes

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