Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 4.4e-80 301.2 150 100.0
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.2e-66 256.5 150 81.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 6.8e-65 250.8 150 82.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.5e-64 249.6 150 80.7
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.2e-63 245.7 161 75.8
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 5.4e-62 241.1 150 77.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.3e-60 235.7 150 75.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.6e-60 233.8 148 76.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.1e-59 233.4 143 78.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.1e-58 227.3 149 71.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 70.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 69.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 70.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 7.6e-56 220.7 147 72.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 70.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 68.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 70.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 69.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 70.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 68.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 68.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 66.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 69.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 69.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.4e-54 216.5 151 67.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 67.3
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.4e-54 215.7 147 68.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 67.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.2e-53 213.4 149 67.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 69.3
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 68.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 69.4
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 68.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 69.4
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 68.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 4.6e-53 211.5 147 69.4
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 67.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 66.9
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 65.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 68.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 64.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 68.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 64.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.0e-52 208.8 222 50.9
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 66.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 66.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 64.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 146 65.8
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 66.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.5e-51 206.5 150 65.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.3e-51 205.3 150 63.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.3e-51 205.3 150 64.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.3e-51 205.3 150 65.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.3e-51 204.9 150 64.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.6e-51 204.5 147 64.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.6e-51 204.5 147 66.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 7.3e-51 204.1 147 66.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.6e-51 203.8 150 63.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.6e-51 203.8 150 64.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 62.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 62.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.1e-50 202.6 170 60.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 65.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.7e-50 201.4 150 63.3
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 63.9
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 6.2e-50 201.1 147 63.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 64.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.1e-50 200.7 150 62.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.1e-50 200.7 150 62.7
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 62.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.1e-49 200.3 149 62.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 157 61.1
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-49 199.5 150 62.7
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.1e-49 198.7 149 65.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.0e-49 198.4 146 62.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 65.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.9e-49 197.6 150 62.0
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.0e-49 197.2 149 63.8
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.6e-48 195.7 160 58.8
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.4e-48 195.3 147 60.5
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 146 62.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 5.8e-48 194.5 142 64.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.8e-48 194.5 149 63.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.6e-48 194.1 147 63.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 143 63.6
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.2e-47 192.6 149 60.4
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.9e-47 191.4 162 58.0
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 63.1
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 6.4e-47 191.0 161 58.4
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 62.9
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 62.9
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 62.9
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 59.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.4e-47 190.7 143 62.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 145 62.1
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 145 62.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-46 189.9 149 61.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.4e-46 189.9 149 60.4
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.4e-46 189.9 149 62.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 59.2
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 4.2e-46 188.3 149 60.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 4.2e-46 188.3 149 59.7
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 63.3
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.1e-45 186.0 152 59.9
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.7e-45 185.7 135 66.7
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.7e-45 185.7 149 59.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.5e-45 185.3 140 60.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.3e-44 183.3 149 59.1
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.0e-44 182.2 193 50.8
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.0e-44 182.2 149 59.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 8.7e-44 180.6 147 59.9
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.1e-43 180.3 181 50.8
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.3e-43 178.3 139 58.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.3e-42 176.8 139 59.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.0e-41 170.6 143 56.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.5e-40 169.9 144 54.9
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 7.6e-40 167.5 144 55.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-39 166.8 144 53.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.3e-39 166.8 150 52.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-39 166.8 150 52.7
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-39 166.4 144 54.2
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-38 161.0 143 53.1
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-38 161.0 143 53.1
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.1e-38 161.0 143 53.1
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-37 159.5 143 53.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.6e-37 158.3 144 52.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.3e-36 156.8 143 52.4
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 3.9e-36 155.2 142 54.2
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.9e-35 152.9 149 52.3
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.4e-35 151.0 89 77.5
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-34 150.2 89 79.8
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-34 149.8 151 53.6
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-34 148.7 105 64.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-34 148.7 105 64.8
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.3e-33 144.8 89 77.5
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.2e-32 143.7 97 67.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-32 142.5 122 54.9
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 5.8e-32 141.4 149 50.3
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.7e-31 139.8 133 51.9
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.2e-31 139.4 129 56.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.2e-31 139.4 129 56.6
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 8.4e-31 137.5 89 69.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-29 133.3 153 46.4
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 9.6e-27 124.0 145 44.8
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.8e-26 122.5 106 53.8
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.5e-24 115.2 149 45.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 5.8e-24 114.8 144 42.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 7.6e-24 114.4 84 58.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.7e-23 113.2 139 40.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.2e-23 112.8 82 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 9.3e-22 107.5 138 35.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.7e-20 101.3 103 47.6
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.3e-19 99.0 85 50.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.7e-19 97.4 138 31.9
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.6e-16 89.4 141 31.2
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.7e-15 86.7 144 37.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 7.2e-14 81.3 71 57.7
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.6e-13 78.6 52 69.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.8e-12 76.6 107 31.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-12 76.3 87 46.0
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 6.7e-12 74.7 133 27.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.8e-10 68.6 44 65.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.8e-09 66.6 101 32.7
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.3e-09 65.1 85 43.5
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 3.4e-08 62.4 129 24.0
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.4e-08 62.4 46 60.9
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 5.9e-08 61.6 132 26.5


User provided reference genes

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