Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 1.5e-52 209.5 126 100.0
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.7e-27 124.8 122 67.2
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.5e-25 119.8 123 61.8
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 8.7e-21 104.0 124 56.5
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 5.6e-20 101.3 131 55.7
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 1.3e-19 100.1 131 51.1
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 2.1e-19 99.4 132 44.7
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.2e-17 93.6 130 50.0
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.2e-17 93.6 117 60.7
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 1.5e-17 93.2 108 59.3
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.6e-17 92.4 128 45.3
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.4e-17 92.0 132 54.5
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 5.8e-17 91.3 131 52.7
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 4.9e-16 88.2 114 57.0
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 8.4e-16 87.4 131 53.4
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 2.7e-14 82.4 128 46.9
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 3.5e-14 82.0 130 50.0
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 3.5e-14 82.0 129 47.3
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 3.5e-14 82.0 129 48.1
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 7.9e-14 80.9 127 50.4
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 7.9e-14 80.9 118 53.4
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.0e-13 80.5 128 53.1
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.0e-13 80.5 106 60.4
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.0e-13 80.5 128 50.0
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 1.0e-13 80.5 86 72.1
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.3e-13 80.1 84 70.2
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.0e-13 79.0 128 43.0
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 3.0e-13 79.0 117 52.1
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 8.7e-13 77.4 114 52.6
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.9e-12 76.3 124 50.8
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 2.5e-12 75.9 114 50.9
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 4.3e-12 75.1 129 45.7
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 5.6e-12 74.7 127 48.8
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 9.6e-12 73.9 81 58.0
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.6e-11 73.2 136 47.8
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 2.1e-11 72.8 81 70.4
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 2.1e-11 72.8 128 50.8
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.8e-11 72.4 114 52.6
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 4.8e-11 71.6 82 64.6
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 8.1e-11 70.9 107 53.3
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 95 56.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 87 43.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.1e-10 70.5 123 49.6
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.4e-10 70.1 121 48.8
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.4e-10 70.1 128 43.0
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 1.8e-10 69.7 87 43.7
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 2.4e-10 69.3 88 60.2
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 3.1e-10 68.9 131 46.6
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 3.1e-10 68.9 88 58.0
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.1e-10 68.9 128 42.2
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 3.1e-10 68.9 128 42.2
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 4.0e-10 68.6 131 45.8
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 6.9e-10 67.8 95 55.8
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.2e-09 67.0 131 43.5
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 1.5e-09 66.6 137 38.0
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 2.6e-09 65.9 80 58.8
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 2.6e-09 65.9 110 42.7
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 3.4e-09 65.5 127 48.0
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 3.4e-09 65.5 143 44.1
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 4.5e-09 65.1 128 46.9
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 7.6e-09 64.3 41 80.5
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 9.9e-09 63.9 105 40.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.3e-08 63.5 123 48.8
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.3e-08 63.5 73 50.7
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.7e-08 63.2 141 41.8
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 2.9e-08 62.4 79 62.0
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 3.8e-08 62.0 123 48.8
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 3.8e-08 62.0 75 53.3
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 4.9e-08 61.6 140 44.3
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 6.4e-08 61.2 146 43.2
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.1e-07 60.5 133 44.4
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-07 60.1 123 47.2
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.4e-07 60.1 73 61.6
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 1.9e-07 59.7 69 63.8
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 3.2e-07 58.9 119 46.2
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 4.2e-07 58.5 119 46.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 4.2e-07 58.5 119 46.2
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 5.5e-07 58.2 130 43.1
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 7.1e-07 57.8 75 44.0
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 9.3e-07 57.4 140 47.9
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.2e-06 57.0 123 45.5
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.2e-06 57.0 123 45.5
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.6e-06 56.6 123 45.5
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 1.6e-06 56.6 119 46.2
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.7e-06 55.8 82 56.1
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 3.5e-06 55.5 37 73.0
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 4.6e-06 55.1 77 58.4
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 6.0e-06 54.7 123 47.2


User provided reference genes

Program Settings