Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.0e-116 421.8 204 100.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 3.0e-87 325.5 212 78.3
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 4.4e-75 285.0 168 76.2
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 7.6e-75 284.3 156 82.7
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 9.9e-75 283.9 167 77.8
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.9e-75 283.9 192 70.8
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.3e-74 283.5 155 83.2
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.2e-74 282.7 197 70.1
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.9e-74 282.3 164 78.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.4e-73 280.0 151 80.8
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.9e-73 279.6 144 86.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.4e-73 279.3 169 75.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 2.4e-73 279.3 151 80.8
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.2e-73 278.9 151 80.8
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 5.4e-73 278.1 145 84.8
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 5.4e-73 278.1 157 81.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.6e-72 276.6 151 83.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 1.6e-72 276.6 144 83.3
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.7e-72 275.8 156 78.8
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.7e-72 275.8 158 79.7
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 4.6e-72 275.0 144 82.6
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 4.6e-72 275.0 156 80.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.6e-72 275.0 158 80.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 4.6e-72 275.0 158 80.4
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 4.6e-72 275.0 156 79.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 6.0e-72 274.6 158 78.5
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 6.0e-72 274.6 196 67.3
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.0e-71 273.9 162 75.9
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.0e-71 273.9 144 85.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.3e-71 273.5 174 73.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.3e-71 273.5 166 74.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.7e-71 273.1 158 79.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.7e-71 273.1 157 79.6
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.7e-71 273.1 158 79.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.3e-71 272.7 145 82.8
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.3e-71 272.7 144 84.0
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 3.0e-71 272.3 157 79.0
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.9e-71 271.9 164 76.2
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 5.1e-71 271.6 151 80.1
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 5.1e-71 271.6 144 83.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 6.6e-71 271.2 145 82.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 8.7e-71 270.8 151 79.5
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 8.7e-71 270.8 151 81.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.1e-70 270.4 145 82.8
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-70 270.0 156 79.5
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.5e-70 270.0 180 71.1
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-70 269.6 151 78.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.9e-70 269.6 148 81.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.9e-70 269.6 168 73.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.5e-70 269.2 151 78.8
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 2.5e-70 269.2 145 81.4
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.5e-70 269.2 156 78.8
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 3.3e-70 268.9 198 65.2
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 4.3e-70 268.5 143 82.5
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 4.3e-70 268.5 143 82.5
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.3e-70 268.5 147 80.3
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 5.6e-70 268.1 156 78.8
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 5.6e-70 268.1 189 67.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 5.6e-70 268.1 156 78.8
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.3e-70 267.7 165 73.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.3e-70 267.7 165 73.9
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 7.3e-70 267.7 157 77.7
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-69 266.5 145 80.7
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.1e-69 266.2 166 74.7
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 2.1e-69 266.2 148 79.1
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.1e-69 266.2 145 81.4
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 2.1e-69 266.2 148 79.1
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.8e-69 265.8 189 67.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.8e-69 265.0 172 70.3
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 6.2e-69 264.6 175 70.9
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 8.1e-69 264.2 143 80.4
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.1e-68 263.8 149 79.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.1e-68 263.8 169 73.4
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-68 263.8 169 73.4
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.4e-68 263.5 155 75.5
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.8e-68 263.1 151 76.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.8e-68 263.1 189 67.2
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.1e-68 262.3 212 60.4
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.3e-68 261.5 150 76.7
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 6.9e-68 261.2 189 66.7
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-67 260.4 143 76.9
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.6e-67 259.2 176 69.9
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.6e-67 259.2 168 70.2
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 3.4e-67 258.8 142 80.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.9e-67 257.3 154 77.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.4e-66 254.6 142 78.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.1e-62 243.8 127 85.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.9e-62 243.0 144 73.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.5e-62 242.7 126 84.9
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.3e-62 242.3 142 73.9
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 5.6e-62 241.5 140 72.1
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.8e-60 236.5 180 66.1
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 6.9e-60 234.6 133 80.5
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 9.0e-60 234.2 126 83.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.4e-59 232.3 120 85.8
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 6.4e-58 228.0 149 70.5
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 4.2e-57 225.3 119 82.4
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 5.5e-57 224.9 120 82.5
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.5e-57 224.9 124 81.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 9.3e-57 224.2 128 78.9
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.6e-56 223.4 139 74.1
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 2.7e-56 222.6 119 84.0
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.5e-56 222.2 167 64.7
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.6e-56 221.9 140 67.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 6.0e-56 221.5 164 66.5
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 4.5e-51 205.3 120 75.8
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.2e-49 199.1 118 76.3
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.7e-48 196.1 130 71.5
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.9e-48 194.5 99 84.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 8.7e-47 191.0 115 72.2
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.1e-45 186.4 206 53.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.6e-40 170.2 99 79.8
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.6e-40 169.1 164 52.4
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.6e-40 168.7 116 69.0
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.9e-39 165.6 140 52.1
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.3e-38 162.5 98 74.5
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.4e-38 161.4 147 51.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.2e-37 159.8 147 51.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.7e-37 159.1 88 79.5
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 6.9e-36 154.8 140 52.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.0e-34 151.0 151 47.0
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.0e-34 151.0 161 47.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 7.9e-32 141.4 144 49.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.1e-28 131.0 85 67.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 6.9e-28 128.3 171 42.1
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.8e-26 122.5 72 76.4
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.5e-25 119.8 69 76.8
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 9.4e-25 117.9 59 84.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.7e-23 111.7 120 46.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 9.7e-22 107.8 53 88.7
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.9e-17 93.6 154 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 3.7e-13 79.3 74 51.4
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 8.2e-13 78.2 145 32.4
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.0e-10 71.2 31 96.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.9e-09 67.0 141 31.2
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 5.2e-07 58.9 83 41.0
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.5e-06 57.4 154 25.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.0e-06 57.0 127 29.1
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 3.4e-06 56.2 66 45.5


User provided reference genes

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