Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 6.7e-182 640.6 330 100.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.8e-124 448.7 330 73.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 4.6e-114 415.2 329 68.7
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.3e-112 409.1 330 69.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.3e-112 409.1 330 69.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.2e-111 404.8 325 67.7
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 5.3e-110 401.7 335 65.1
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 6.9e-110 401.4 326 66.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 8.4e-108 394.4 325 67.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.4e-107 392.9 326 65.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-106 390.2 335 65.1
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.3e-105 387.1 333 64.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 8.7e-105 384.4 330 63.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 4.3e-104 382.1 329 62.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-102 376.7 330 62.7
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.5e-101 373.6 327 63.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.4e-101 372.5 329 62.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 7.6e-101 371.3 332 62.0
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.4e-99 367.1 344 60.2
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 5.5e-99 365.2 329 60.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 4.6e-98 362.1 268 72.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.5e-96 357.1 335 60.3
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 6.2e-95 351.7 333 59.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.2e-95 351.3 325 60.3
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.4e-94 350.5 333 58.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.4e-94 349.7 325 58.5
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.4e-94 349.7 325 58.5
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.4e-93 345.9 327 59.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.3e-92 344.0 330 58.8
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.3e-92 344.0 330 58.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.4e-92 341.3 330 58.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-91 340.9 330 59.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-91 340.9 332 55.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 4.2e-91 339.0 388 51.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 9.3e-91 337.8 328 57.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.0e-89 334.3 333 58.9
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-88 330.9 327 58.7
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.5e-88 330.5 332 58.4
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.5e-88 330.5 333 56.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.7e-88 328.6 328 57.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 9.7e-88 327.8 335 55.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.7e-87 325.9 331 56.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.6e-85 319.7 332 57.2
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.4e-85 319.3 331 52.6
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 7.7e-85 318.2 333 55.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.0e-84 315.5 331 55.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.6e-82 310.5 276 61.6
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.1e-82 308.5 333 51.7
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 7.9e-82 308.1 339 50.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.0e-81 306.2 328 53.4
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.0e-81 306.2 335 54.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.8e-81 304.7 337 53.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.5e-80 303.1 333 53.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.3e-80 302.4 392 47.7
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 4.8e-79 298.9 332 52.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.4e-78 297.4 330 53.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 3.1e-78 296.2 331 53.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.7e-76 290.4 333 51.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-76 290.0 392 46.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-76 290.0 339 52.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.1e-75 287.7 333 53.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.4e-75 287.3 340 53.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.9e-75 287.0 332 50.6
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 4.2e-75 285.8 335 50.1
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 7.2e-75 285.0 333 53.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 9.4e-75 284.6 335 51.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.7e-74 283.1 333 52.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.1e-74 282.0 319 51.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 7.9e-74 281.6 337 50.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 7.9e-74 281.6 402 43.8
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 3.0e-73 279.6 321 50.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.0e-72 276.9 332 49.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 3.3e-72 276.2 333 51.1
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 7.4e-72 275.0 333 51.1
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.8e-70 270.4 333 48.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.1e-70 269.2 326 50.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 9.1e-70 268.1 332 50.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.0e-69 266.9 333 48.6
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.0e-68 264.6 329 47.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.0e-68 264.6 307 52.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 9.4e-67 258.1 325 49.5
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.1e-66 255.4 389 45.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 8.0e-66 255.0 331 49.2
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.0e-65 254.6 327 50.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-65 254.6 334 47.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.9e-65 252.7 334 46.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.2e-65 252.3 330 47.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.8e-65 251.5 278 51.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.6e-64 250.0 305 48.2
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 5.3e-62 242.3 326 45.4
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 9.1e-62 241.5 325 46.5
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.2e-60 236.9 334 46.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.0e-60 235.7 334 44.9
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.5e-59 233.4 286 47.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 4.2e-59 232.6 334 43.7
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 5.5e-59 232.3 371 42.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.2e-58 231.1 321 44.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.4e-57 227.6 334 45.5
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.4e-57 227.6 325 44.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.0e-57 226.1 270 48.5
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 5.7e-56 222.2 328 42.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.3e-55 218.4 308 43.8
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.4e-54 217.6 331 42.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.8e-54 217.2 304 44.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 7.0e-54 215.3 335 42.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 9.1e-54 214.9 293 44.0
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.7e-53 213.4 333 42.9
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.7e-52 210.7 262 46.9
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.7e-52 210.7 365 39.2
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.9e-52 209.9 341 40.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.1e-51 208.0 155 69.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.5e-51 206.8 385 37.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-50 204.5 364 40.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-50 204.1 303 42.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.7e-50 203.4 333 40.5
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.7e-50 203.4 170 64.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.7e-50 202.6 304 41.8
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 6.1e-50 202.2 304 42.4
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-49 201.1 297 41.1
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 3.0e-49 199.9 300 42.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.0e-49 199.5 354 39.3
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.2e-49 199.1 262 46.6
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-48 198.0 333 41.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-48 196.8 333 41.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-48 196.1 300 42.0
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 4.9e-47 192.6 333 40.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.4e-46 191.0 302 41.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 3.1e-46 189.9 327 39.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 3.1e-46 189.9 327 39.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 5.4e-46 189.1 360 38.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 7.0e-46 188.7 197 52.8
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.7e-45 186.8 305 41.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.5e-45 186.0 314 42.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 7.7e-45 185.3 295 40.3
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.7e-44 184.1 211 48.8
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-43 179.9 334 40.4
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.2e-43 178.7 276 43.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.9e-41 171.8 180 53.9
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 8.3e-39 165.2 149 60.4
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-38 164.9 373 33.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 8.6e-36 155.2 150 57.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-34 151.4 154 55.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.7e-34 149.4 329 35.6
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.2e-31 140.6 313 33.9
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.9e-31 140.2 157 51.6
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.9e-31 140.2 226 41.2
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-31 140.2 150 56.7
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.7e-31 139.8 235 38.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.7e-31 139.8 157 51.6
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 8.3e-31 138.7 268 38.1
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.9e-30 137.5 158 44.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-30 137.5 373 30.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.2e-30 135.2 202 44.1
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 7.3e-27 125.6 234 40.6
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-25 121.3 104 64.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.1e-25 120.2 259 35.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 9.8e-24 115.2 129 50.4
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-23 113.2 132 52.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-23 112.5 197 44.7
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.4e-22 111.3 266 32.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 7.1e-22 109.0 133 51.1
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 6.6e-20 102.4 94 59.6
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 3.6e-18 96.7 208 33.2
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.5e-16 91.3 138 39.9
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.5e-16 91.3 138 39.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.9e-14 84.3 221 34.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.2e-13 81.6 334 27.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 2.1e-13 80.9 275 31.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-13 80.5 46 80.4
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.7e-12 77.8 196 32.7
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-12 77.0 222 31.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 3.0e-12 77.0 222 31.5
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 3.3e-11 73.6 103 53.4
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.3e-11 73.6 79 50.6
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 9.6e-11 72.0 86 48.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.6e-10 70.1 208 28.8
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 4.0e-09 66.6 53 58.5
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-06 58.2 63 49.2
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 4.2e-06 56.6 94 42.6
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.2e-06 56.6 74 50.0


User provided reference genes

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