Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 5.8e-270 933.7 495 100.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.1e-87 328.2 362 48.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 5.2e-85 319.3 354 49.4
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.7e-83 314.3 397 45.3
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.9e-80 303.5 426 43.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 8.5e-80 302.0 438 40.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 8.5e-80 302.0 430 42.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.1e-79 301.6 350 46.3
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.9e-79 300.8 371 44.7
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 7.2e-79 298.9 373 45.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 7.2e-79 298.9 355 45.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 9.4e-79 298.5 406 42.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.1e-78 297.4 394 43.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.7e-78 297.0 459 38.8
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.6e-78 296.6 449 39.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 6.1e-78 295.8 426 43.9
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 8.0e-78 295.4 342 46.5
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.0e-77 295.0 347 45.8
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.8e-77 294.3 360 44.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.8e-77 294.3 453 40.8
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.3e-77 293.9 327 48.3
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 6.7e-77 292.4 378 45.2
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 6.7e-77 292.4 441 42.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-76 291.6 418 41.4
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.5e-76 291.2 330 47.3
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-76 291.2 360 45.0
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-76 291.2 345 44.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.5e-76 291.2 355 44.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.0e-76 290.8 358 46.6
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.6e-76 290.4 409 42.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 3.3e-76 290.0 441 41.3
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 4.4e-76 289.7 457 39.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 4.4e-76 289.7 373 44.0
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.4e-76 289.7 358 46.6
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 4.4e-76 289.7 370 44.3
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 7.5e-76 288.9 361 44.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.7e-75 287.7 345 44.6
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.7e-75 287.7 440 40.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.2e-75 287.3 345 44.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.2e-75 287.3 368 44.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.8e-75 287.0 346 46.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.8e-75 287.0 431 40.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.7e-75 286.6 346 44.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.7e-75 286.6 450 39.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.3e-75 285.8 361 44.3
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 6.3e-75 285.8 366 44.0
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-74 285.0 442 41.0
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-74 284.3 345 44.3
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.4e-74 283.9 355 43.9
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.1e-74 283.1 345 44.1
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 9.1e-74 282.0 343 47.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.6e-73 281.2 408 40.4
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.0e-73 280.8 345 44.3
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.0e-73 280.8 365 42.5
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.7e-73 280.4 399 43.1
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 4.5e-73 279.6 345 44.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 5.9e-73 279.3 368 42.1
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 7.7e-73 278.9 358 43.3
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.0e-72 278.5 364 41.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.3e-72 278.1 344 43.3
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-72 278.1 366 44.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.7e-72 277.7 365 42.2
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.9e-72 276.9 346 42.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.0e-72 276.2 398 41.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.5e-72 275.8 398 41.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 6.5e-72 275.8 355 43.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 8.5e-72 275.4 364 42.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-71 274.6 398 41.0
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.5e-71 274.6 372 41.9
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 5.5e-71 272.7 372 41.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 9.4e-71 271.9 355 43.7
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-70 270.8 375 40.8
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.1e-70 270.8 377 43.0
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 4.7e-70 269.6 378 40.5
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.0e-70 268.9 440 38.6
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 3.0e-69 266.9 337 46.3
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 3.0e-69 266.9 440 36.8
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 5.2e-69 266.2 337 43.0
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.2e-69 266.2 361 41.6
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.8e-69 265.8 439 38.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 5.7e-68 262.7 349 45.0
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.5e-68 262.3 367 44.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.2e-67 260.8 372 42.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.8e-67 260.4 354 40.7
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.7e-67 260.0 335 45.1
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.3e-67 259.2 356 40.7
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 8.3e-67 258.8 358 40.5
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 2.4e-66 257.3 331 44.7
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.4e-66 257.3 352 42.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.1e-66 256.9 349 44.1
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 3.1e-66 256.9 366 41.3
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.4e-66 256.1 349 44.1
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.4e-66 256.1 302 46.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 7.0e-66 255.8 331 44.7
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 7.0e-66 255.8 453 36.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.6e-65 254.6 369 39.3
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.5e-65 253.1 327 45.3
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.9e-64 250.4 384 39.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 6.6e-64 249.2 384 39.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.5e-63 248.1 335 42.4
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.2e-63 246.5 304 44.7
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 5.5e-63 246.1 433 37.4
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 5.5e-63 246.1 353 39.1
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 3.6e-62 243.4 322 42.9
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.0e-61 241.9 351 39.6
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.0e-60 237.7 345 40.6
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 5.7e-60 236.1 353 38.5
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.8e-59 233.8 350 38.0
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.9e-59 233.0 350 38.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 4.9e-59 233.0 403 37.7
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.1e-58 231.9 316 41.5
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 7.0e-58 229.2 345 38.8
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.7e-57 227.3 349 41.3
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.7e-57 227.3 349 38.4
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.7e-57 227.3 349 38.4
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 7.8e-57 225.7 427 36.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.9e-56 223.8 356 38.5
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.0e-56 223.0 372 35.2
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 8.6e-56 222.2 373 36.7
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.1e-54 216.1 355 37.2
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.0e-53 213.8 399 34.6
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.4e-52 209.9 253 45.1
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 9.8e-52 208.8 387 35.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.2e-51 207.6 340 37.4
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.9e-50 204.5 320 40.6
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.6e-46 191.4 368 33.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.8e-46 190.7 173 53.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 3.1e-45 187.2 170 54.7
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 4.0e-45 186.8 174 52.3
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.0e-45 186.8 321 36.8
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 1.3e-43 181.8 180 48.3
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.4e-43 179.5 371 33.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-42 178.7 372 33.1
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.0e-40 172.2 373 33.2
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.5e-39 168.3 373 31.9
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.8e-37 161.4 158 46.8
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.1e-37 160.6 336 33.0
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.3e-35 155.2 378 29.6
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.2e-35 154.5 259 35.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.1e-33 147.9 409 28.9
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-30 137.9 121 54.5
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-30 137.9 121 54.5
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.2e-28 132.1 136 47.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.7e-27 128.3 135 47.4
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 8.4e-27 125.9 139 45.3
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 3.5e-25 120.6 164 40.2
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.6e-24 116.3 218 36.2
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.6e-24 116.3 218 36.2
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.3e-23 114.0 110 49.1
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.1e-22 111.3 213 33.3
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.1e-22 111.3 215 34.4
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.9e-21 106.3 110 47.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 2.8e-14 84.3 230 27.4
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.8e-14 84.3 118 41.5
SGA_v2.0_scaffold15G07348 Striga asiatica HOM05D055570 ORTHO05D045353 1.3e-11 75.5 205 35.6
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 5.1e-08 63.5 78 42.3


User provided reference genes

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