Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.3e-129 466.5 239 100.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 9.7e-114 413.7 239 86.2
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.7e-113 412.9 239 87.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.3e-113 411.0 239 87.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.8e-112 409.5 239 85.8
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.1e-112 408.3 239 85.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 5.9e-111 404.4 239 85.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.9e-110 402.1 239 83.7
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.9e-109 399.4 233 84.5
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.5e-109 397.9 239 82.8
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 9.4e-109 397.1 239 82.4
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 4.7e-108 394.8 239 81.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 7.9e-108 394.0 239 81.6
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.4e-107 393.3 235 81.3
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.8e-107 392.9 236 82.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.8e-107 392.9 236 82.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.9e-107 391.7 235 80.4
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.7e-107 391.0 234 84.6
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 8.8e-107 390.6 233 83.3
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.1e-106 390.2 236 82.2
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.0e-106 389.4 236 81.8
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 4.4e-106 388.3 238 81.9
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 5.7e-106 387.9 233 83.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 9.7e-106 387.1 236 82.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.7e-105 385.2 233 82.4
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 4.8e-105 384.8 226 84.1
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.1e-104 383.6 239 78.2
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.8e-104 382.9 233 81.1
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.4e-104 382.5 236 79.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.4e-104 382.5 233 81.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.5e-103 378.6 236 79.7
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 5.9e-103 377.9 241 79.3
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 7.7e-103 377.5 239 80.3
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.0e-102 377.1 234 80.3
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.3e-102 376.7 236 80.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 80.5
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 3.8e-102 375.2 238 79.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 6.5e-102 374.4 234 79.5
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.5e-101 373.2 237 79.3
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.9e-101 372.9 310 65.8
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.9e-101 372.9 234 80.3
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 5.5e-101 371.3 238 79.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 79.4
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.7e-100 369.0 238 75.6
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 3.6e-100 368.6 233 77.3
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.1e-100 367.9 233 77.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 8.0e-100 367.5 236 77.1
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 8.0e-100 367.5 235 74.9
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 77.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.4e-99 366.7 236 74.6
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.3e-99 365.9 260 70.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 3.0e-99 365.5 204 88.2
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.0e-99 365.2 236 74.6
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.0e-99 365.2 233 77.3
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 6.7e-99 364.4 233 77.7
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.2e-98 363.6 236 73.3
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.0e-98 362.8 228 80.3
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.3e-98 362.1 279 68.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.4e-98 361.7 237 76.4
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.7e-98 361.3 236 73.7
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 7.5e-98 360.9 236 75.0
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 7.5e-98 360.9 236 75.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.3e-97 360.1 236 74.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.7e-97 359.8 236 73.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 74.2
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 74.2
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.8e-97 358.2 233 73.4
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 71.6
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.2e-95 353.6 232 74.1
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.5e-95 352.1 205 87.8
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 4.5e-95 351.7 236 72.5
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 5.9e-95 351.3 272 66.9
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.0e-94 350.5 266 71.4
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.7e-94 349.7 238 74.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.1e-93 347.1 235 75.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 6.1e-92 341.3 204 83.3
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-91 339.7 229 73.8
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 6.8e-91 337.8 210 82.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.2e-90 337.0 239 73.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.5e-90 336.7 239 72.0
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.4e-90 335.5 232 76.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.4e-90 335.5 232 76.3
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 69.5
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 9.8e-90 334.0 233 74.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.7e-89 333.2 206 78.6
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 8.3e-89 330.9 204 80.4
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.1e-88 330.5 203 82.8
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.4e-88 330.1 220 75.9
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.0e-88 327.8 233 70.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.0e-87 326.2 208 76.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.5e-87 325.1 234 67.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.3e-86 323.6 233 67.8
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.3e-86 323.6 205 79.5
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-85 320.5 228 71.9
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.5e-85 318.2 221 72.9
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.2e-84 317.0 238 64.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 8.0e-84 314.3 190 79.5
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-83 313.2 232 69.8
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.0e-83 312.4 232 63.8
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.5e-82 310.1 196 76.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.2e-81 306.2 170 87.6
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.2e-80 300.8 235 62.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.2e-80 300.8 235 62.1
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 9.2e-80 300.8 235 62.6
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-79 299.7 230 63.5
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.0e-79 299.7 235 61.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 2.7e-79 299.3 235 62.6
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.5e-79 298.9 190 80.5
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.9e-79 298.1 233 59.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.5e-77 290.8 208 74.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 6.1e-76 288.1 185 76.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.4e-75 287.0 166 83.1
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.0e-75 285.8 237 59.1
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.4e-74 282.3 232 58.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.2e-73 279.6 226 60.6
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-71 273.5 233 63.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.6e-71 271.9 259 61.8
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.3e-70 270.4 166 82.5
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.3e-70 270.4 153 86.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.1e-69 267.3 223 56.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 4.0e-67 258.8 150 83.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 8.9e-67 257.7 226 58.4
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 4.4e-66 255.4 219 59.8
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-64 250.8 204 66.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.4e-56 223.8 129 86.8
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 5.1e-54 215.3 167 61.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.5e-50 203.8 135 72.6
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.6e-50 203.0 135 73.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.9e-48 196.8 236 49.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 7.8e-47 191.4 236 47.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 3.6e-44 182.6 236 48.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 4.4e-42 175.6 102 83.3
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.2e-41 173.3 104 81.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 8.4e-41 171.4 100 81.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.1e-40 171.0 111 75.7
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.1e-39 166.8 265 42.6
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 5.1e-38 162.2 111 75.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 4.5e-34 149.1 208 39.9
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-31 141.0 136 49.3
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.0e-30 137.9 99 67.7
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.1e-28 128.3 209 34.9
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 7.9e-23 111.7 106 57.5
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.8e-22 110.5 221 34.4
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.8e-22 110.5 221 34.4
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 3.9e-22 109.4 74 71.6
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-20 104.4 68 76.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-17 94.4 56 80.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.9e-17 92.4 198 30.3
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 4.2e-16 89.4 51 86.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.7e-15 86.7 49 81.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.7e-14 82.0 93 46.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 6.3e-12 75.5 48 72.9
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 4.1e-11 72.8 52 67.3
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 3.4e-10 69.7 56 62.5
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.2e-09 67.0 52 55.8
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 3.2e-08 63.2 50 54.0
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 1.2e-07 61.2 73 53.4
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 2.7e-07 60.1 46 65.2


User provided reference genes

Program Settings