Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02720 Erythranthe guttata HOM05D004780 ORTHO05D005590 3.6e-77 291.6 156 100.0
SGA_v2.0_scaffold14G06992 Striga asiatica HOM05D004780 ORTHO05D005590 4.3e-30 135.2 135 55.6
MSTRG.24340 Avicennia marina HOM05D004780 ORTHO05D005590 1.8e-28 129.8 136 56.6
SalBow6G6817 Salvia bowleyana HOM05D004780 ORTHO05D005590 7.4e-22 107.8 60 81.7
arahy.Tifrunner.gnm1.ann1.P7PSM7 Arachis hypogaea HOM05D004780 ORTHO05D005590 1.3e-21 107.1 130 45.4
BcaB02g09961 Brassica carinata HOM05D004780 ORTHO05D005590 1.3e-21 107.1 60 81.7
BcaC06g34786 Brassica carinata HOM05D004780 ORTHO05D005590 1.3e-21 107.1 60 81.7
BolC7t42989H Brassica oleracea HOM05D004780 ORTHO05D005590 1.3e-21 107.1 60 81.7
BcaC03g18389 Brassica carinata HOM05D004780 ORTHO05D005590 2.2e-21 106.3 60 80.0
C02p64650 Brassica napus HOM05D004780 ORTHO05D005590 2.2e-21 106.3 60 80.0
BolC2t12525H Brassica oleracea HOM05D004780 ORTHO05D005590 2.2e-21 106.3 60 80.0
PGR102G2467 Punica granatum HOM05D004780 ORTHO05D005590 2.8e-21 105.9 128 49.2
A07p16880 Brassica napus HOM05D004780 ORTHO05D005590 3.7e-21 105.5 60 80.0
C07p24690 Brassica napus HOM05D004780 ORTHO05D005590 3.7e-21 105.5 59 81.4
BraA07t29414Z Brassica rapa HOM05D004780 ORTHO05D005590 3.7e-21 105.5 60 80.0
BcaB04g20074 Brassica carinata HOM05D004780 ORTHO05D005590 4.8e-21 105.1 60 80.0
arahy.Tifrunner.gnm1.ann1.HINR4A Arachis hypogaea HOM05D004780 ORTHO05D005590 6.3e-21 104.8 130 43.8
BcaC04g23192 Brassica carinata HOM05D004780 ORTHO05D005590 6.3e-21 104.8 60 78.3
C09p11270 Brassica napus HOM05D004780 ORTHO05D005590 6.3e-21 104.8 60 78.3
BolC9t54016H Brassica oleracea HOM05D004780 ORTHO05D005590 6.3e-21 104.8 60 78.3
MBI16_g18335_MAGBIO Magnolia biondii HOM05D004780 ORTHO05D005590 6.3e-21 104.8 126 48.4
Oeu023858.1 Olea europaea HOM05D004780 ORTHO05D005590 6.3e-21 104.8 133 50.4
Sp2g29610 Schrenkiella parvula HOM05D004780 ORTHO05D005590 6.3e-21 104.8 60 78.3
MSTRG.2874 Avicennia marina HOM05D004780 ORTHO05D005590 8.2e-21 104.4 63 77.8
Glyma.11G055200 Glycine max HOM05D004780 ORTHO05D005590 8.2e-21 104.4 122 47.5
A09p44560 Brassica napus HOM05D004780 ORTHO05D005590 1.8e-20 103.2 60 78.3
Rhsim06G0051700 Rhododendron simsii HOM05D004780 ORTHO05D005590 1.8e-20 103.2 60 78.3
BraA09t36602Z Brassica rapa HOM05D004780 ORTHO05D005590 2.4e-20 102.8 63 74.6
Thhalv10005130m.g Eutrema salsugineum HOM05D004780 ORTHO05D005590 2.4e-20 102.8 60 76.7
THA.LOC104827176 Tarenaya hassleriana HOM05D004780 ORTHO05D005590 2.4e-20 102.8 60 78.3
Aa31LG1G15590 Aethionema arabicum HOM05D004780 ORTHO05D005590 3.1e-20 102.4 60 75.0
Carub.0008s2744 Capsella rubella HOM05D004780 ORTHO05D005590 3.1e-20 102.4 60 76.7
AL8G44300 Arabidopsis lyrata HOM05D004780 ORTHO05D005590 4.1e-20 102.1 60 76.7
AT5G67070 Arabidopsis thaliana HOM05D004780 ORTHO05D005590 4.1e-20 102.1 60 76.7
Cpa.g.sc55.141 Carica papaya HOM05D004780 ORTHO05D005590 4.1e-20 102.1 60 78.3
Glyma.01G186800 Glycine max HOM05D004780 ORTHO05D005590 4.1e-20 102.1 136 43.4
TWI73G0829 Tripterygium wilfordii HOM05D004780 ORTHO05D005590 4.1e-20 102.1 127 44.9
A09p09540 Brassica napus HOM05D004780 ORTHO05D005590 5.3e-20 101.7 60 76.7
Duzib147G1343 Durio zibethinus HOM05D004780 ORTHO05D005590 5.3e-20 101.7 124 45.2
Oeu047214.1 Olea europaea HOM05D004780 ORTHO05D005590 5.3e-20 101.7 60 80.0
Phvul.002G018200 Phaseolus vulgaris HOM05D004780 ORTHO05D005590 5.3e-20 101.7 133 42.9
ATR0584G062 Amborella trichopoda HOM05D004780 ORTHO05D005590 7.0e-20 101.3 139 44.6
QL06p041210 Quercus lobata HOM05D004780 ORTHO05D005590 7.0e-20 101.3 126 42.9
TPR.G30700 Trifolium pratense HOM05D004780 ORTHO05D005590 7.0e-20 101.3 97 55.7
Ca_24764_v3 Cicer arietinum L. HOM05D004780 ORTHO05D005590 9.1e-20 100.9 62 74.2
Lalb_Chr09g0323221 Lupinus albus HOM05D004780 ORTHO05D005590 9.1e-20 100.9 125 44.8
CSS0043615 Camellia sinensis var. sinensis HOM05D004780 ORTHO05D005590 1.2e-19 100.5 60 76.7
CARHR280580 Cardamine hirsuta HOM05D004780 ORTHO05D005590 1.2e-19 100.5 60 75.0
TWI09G1123 Tripterygium wilfordii HOM05D004780 ORTHO05D005590 1.2e-19 100.5 129 47.3
CsaV3_2G017290 Cucumis sativus L. HOM05D004780 ORTHO05D005590 1.5e-19 100.1 137 43.8
Potri.007G044700 Populus trichocarpa HOM05D004780 ORTHO05D005590 1.5e-19 100.1 130 45.4
Rhsim08G0100100 Rhododendron simsii HOM05D004780 ORTHO05D005590 1.5e-19 100.1 131 46.6
TAR628G0259 Trochodendron aralioides HOM05D004780 ORTHO05D005590 1.5e-19 100.1 60 76.7
Nn1g04822 Nelumbo nucifera HOM05D004780 ORTHO05D005590 2.6e-19 99.4 60 75.0
Nn5g30267 Nelumbo nucifera HOM05D004780 ORTHO05D005590 2.6e-19 99.4 60 75.0
Solyc02g090960.1 Solanum lycopersicum HOM05D004780 ORTHO05D005590 2.6e-19 99.4 121 44.6
Thecc.01G057500 Theobroma cacao HOM05D004780 ORTHO05D005590 2.6e-19 99.4 96 53.1
GSVIVG01022118001 Vitis vinifera HOM05D004780 ORTHO05D005590 2.6e-19 99.4 122 45.9
Duzib187G0281 Durio zibethinus HOM05D004780 ORTHO05D005590 3.5e-19 99.0 60 76.7
Oeu062445.1 Olea europaea HOM05D004780 ORTHO05D005590 3.5e-19 99.0 60 76.7
RcHm_v2.0_Chr2g0105821 Rosa chinensis HOM05D004780 ORTHO05D005590 3.5e-19 99.0 60 76.7
unitig_899.g14944 Utricularia gibba HOM05D004780 ORTHO05D005590 3.5e-19 99.0 60 76.7
CANSAT01G1455 Cannabis sativa HOM05D004780 ORTHO05D005590 4.5e-19 98.6 129 41.9
CAN.G370.56 Capsicum annuum HOM05D004780 ORTHO05D005590 4.5e-19 98.6 123 46.3
Gohir.A11G192920 Gossypium hirsutum HOM05D004780 ORTHO05D005590 4.5e-19 98.6 60 75.0
Peaxi162Scf01113g00005 Petunia axillaris HOM05D004780 ORTHO05D005590 4.5e-19 98.6 97 53.6
Atru.chr3.312 Acer truncatum HOM05D004780 ORTHO05D005590 5.9e-19 98.2 60 75.0
MELO3C020932.2 Cucumis melo HOM05D004780 ORTHO05D005590 7.7e-19 97.8 130 43.8
DCAR_012782 Daucus carota HOM05D004780 ORTHO05D005590 7.7e-19 97.8 60 76.7
Gohir.D11G199700 Gossypium hirsutum HOM05D004780 ORTHO05D005590 7.7e-19 97.8 60 75.0
Gorai.007G213800 Gossypium raimondii HOM05D004780 ORTHO05D005590 7.7e-19 97.8 60 75.0
Migut.H00425 Erythranthe guttata HOM05D004780 ORTHO05D005590 1.0e-18 97.4 61 73.8
FvH4_1g16140 Fragaria vesca HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
FAN19G0458 Fragaria x ananassa HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
FAN23G0585 Fragaria x ananassa HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
FAN26G1593 Fragaria x ananassa HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
FAN28G0806 Fragaria x ananassa HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
HanXRQChr12g0381281 Helianthus annuus HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
Hma1.2p1_0017F.1_g011460 Hydrangea macrophylla HOM05D004780 ORTHO05D005590 1.0e-18 97.4 122 45.9
Lsat_1_v5_gn_4_165900 Lactuca sativa HOM05D004780 ORTHO05D005590 1.0e-18 97.4 62 75.8
Prupe.7G132200 Prunus persica HOM05D004780 ORTHO05D005590 1.0e-18 97.4 60 75.0
Sopen02g035610 Solanum pennellii HOM05D004780 ORTHO05D005590 1.0e-18 97.4 122 44.3
HanXRQChr15g0490381 Helianthus annuus HOM05D004780 ORTHO05D005590 1.3e-18 97.1 63 71.4
Nn1g03799 Nelumbo nucifera HOM05D004780 ORTHO05D005590 1.3e-18 97.1 62 71.0
Nitab4.5_0005144g0020 Nicotiana tabacum HOM05D004780 ORTHO05D005590 1.3e-18 97.1 124 46.0
Sc16g0004670 Simmondsia chinensis HOM05D004780 ORTHO05D005590 1.3e-18 97.1 60 76.7
Psat2g166520 Pisum sativum HOM05D004780 ORTHO05D005590 1.7e-18 96.7 136 44.9
Ciclev10026759m.g Citrus clementina HOM05D004780 ORTHO05D005590 2.2e-18 96.3 60 73.3
THA.LOC104819237 Tarenaya hassleriana HOM05D004780 ORTHO05D005590 2.2e-18 96.3 45 91.1
TAR376G0922 Trochodendron aralioides HOM05D004780 ORTHO05D005590 2.2e-18 96.3 126 47.6
ECA232G3279 Erigeron canadensis HOM05D004780 ORTHO05D005590 2.9e-18 95.9 60 71.7
Gohir.A10G091700 Gossypium hirsutum HOM05D004780 ORTHO05D005590 2.9e-18 95.9 60 73.3
Nitab4.5_0003298g0030 Nicotiana tabacum HOM05D004780 ORTHO05D005590 2.9e-18 95.9 121 46.3
Hma1.2p1_0360F.1_g135640 Hydrangea macrophylla HOM05D004780 ORTHO05D005590 3.8e-18 95.5 124 45.2
Lj2g0001321 Lotus japonicus HOM05D004780 ORTHO05D005590 3.8e-18 95.5 60 71.7
MD02G1173500 Malus domestica HOM05D004780 ORTHO05D005590 3.8e-18 95.5 63 71.4
PSO210G3073 Papaver somniferum HOM05D004780 ORTHO05D005590 3.8e-18 95.5 127 45.7
Thecc.08G004700 Theobroma cacao HOM05D004780 ORTHO05D005590 3.8e-18 95.5 118 45.8
CiPaw.02G007900 Carya illinoinensis HOM05D004780 ORTHO05D005590 5.0e-18 95.1 60 73.3
PGSC0003DMG400004038 Solanum tuberosum HOM05D004780 ORTHO05D005590 5.0e-18 95.1 122 45.9
Medtr5g017160 Medicago truncatula HOM05D004780 ORTHO05D005590 6.5e-18 94.7 128 44.5
COL.COLO4_11434 Corchorus olitorius HOM05D004780 ORTHO05D005590 8.5e-18 94.4 136 48.5
Cc10_g04550 Coffea canephora HOM05D004780 ORTHO05D005590 1.1e-17 94.0 135 48.1
Gohir.A12G071800 Gossypium hirsutum HOM05D004780 ORTHO05D005590 1.1e-17 94.0 60 71.7
Gohir.D10G096600 Gossypium hirsutum HOM05D004780 ORTHO05D005590 1.4e-17 93.6 60 71.7
Gorai.011G105900 Gossypium raimondii HOM05D004780 ORTHO05D005590 1.4e-17 93.6 60 71.7
Sabra05G0111700 Salix brachista HOM05D004780 ORTHO05D005590 1.4e-17 93.6 134 44.0
Sabra14G0018400 Salix brachista HOM05D004780 ORTHO05D005590 1.4e-17 93.6 125 42.4
Sed0013836 Sechium edule HOM05D004780 ORTHO05D005590 1.4e-17 93.6 60 70.0
EL10Ac6g15736 Beta vulgaris HOM05D004780 ORTHO05D005590 1.9e-17 93.2 60 70.0
CiPaw.01G017400 Carya illinoinensis HOM05D004780 ORTHO05D005590 1.9e-17 93.2 60 71.7
Manes.13G123500 Manihot esculenta HOM05D004780 ORTHO05D005590 1.9e-17 93.2 60 71.7
MD15G1285000 Malus domestica HOM05D004780 ORTHO05D005590 2.5e-17 92.8 60 71.7
AUR62001922 Chenopodium quinoa HOM05D004780 ORTHO05D005590 3.2e-17 92.4 61 70.5
Sabra07G0039600 Salix brachista HOM05D004780 ORTHO05D005590 4.2e-17 92.0 133 41.4
Cfa004029 Carpinus fangiana HOM05D004780 ORTHO05D005590 5.5e-17 91.7 60 70.0
Cc07_g06070 Coffea canephora HOM05D004780 ORTHO05D005590 5.5e-17 91.7 60 71.7
Haze_15389 Corylus avellana HOM05D004780 ORTHO05D005590 5.5e-17 91.7 60 70.0
Haze_15390 Corylus avellana HOM05D004780 ORTHO05D005590 5.5e-17 91.7 60 70.0
Duzib116G0051 Durio zibethinus HOM05D004780 ORTHO05D005590 5.5e-17 91.7 122 42.6
Manes.12G103411 Manihot esculenta HOM05D004780 ORTHO05D005590 5.5e-17 91.7 60 70.0
Potri.014G026900 Populus trichocarpa HOM05D004780 ORTHO05D005590 5.5e-17 91.7 61 68.9
CDE06G1121 Ceratophyllum demersum HOM05D000895 ORTHO05D005590 7.2e-17 91.3 60 73.3
COL.COLO4_26533 Corchorus olitorius HOM05D004780 ORTHO05D005590 7.2e-17 91.3 60 70.0
Gohir.D12G069800 Gossypium hirsutum HOM05D004780 ORTHO05D005590 9.4e-17 90.9 60 70.0
Potri.005G139100 Populus trichocarpa HOM05D004780 ORTHO05D005590 2.1e-16 89.7 137 40.9
Gorai.008G076900 Gossypium raimondii HOM05D004780 ORTHO05D005590 2.7e-16 89.4 133 42.9
Manes.18G038800 Manihot esculenta HOM05D004780 ORTHO05D005590 2.7e-16 89.4 47 80.9
Atru.chr13.715 Acer truncatum HOM05D004780 ORTHO05D005590 3.6e-16 89.0 60 68.3
Ah.03g145230 Amaranthus hybridus HOM05D004780 ORTHO05D005590 6.1e-16 88.2 60 68.3
PSO541G4783 Papaver somniferum HOM05D004780 ORTHO05D005590 2.3e-15 86.3 60 66.7
PSO675G8229 Papaver somniferum HOM05D004780 ORTHO05D005590 3.0e-15 85.9 60 66.7
HPP92_016141 Vanilla planifolia HOM05D004780 ORTHO05D005590 3.0e-15 85.9 61 65.6
Aqoxy5G01213 Aquilegia oxysepala HOM05D004780 ORTHO05D005590 3.9e-15 85.5 93 48.4
Gohir.D06G017900 Gossypium hirsutum HOM05D004780 ORTHO05D005590 3.9e-15 85.5 46 82.6
Gohir.A06G019500 Gossypium hirsutum HOM05D004780 ORTHO05D005590 5.2e-15 85.1 46 82.6
Gorai.010G020800 Gossypium raimondii HOM05D004780 ORTHO05D005590 5.2e-15 85.1 46 82.6
DCAR_010886 Daucus carota HOM05D004780 ORTHO05D005590 1.5e-14 83.6 59 62.7
Actinidia23291 Actinidia chinensis HOM05D004780 ORTHO05D005590 2.6e-14 82.8 123 40.7
ClCG02G013230 Citrullus lanatus HOM05D003142 ORTHO05D003600 6.3e-13 78.2 122 40.2
Mapoly0076s0067 Marchantia polymorpha HOM05D004780 ORTHO05D005590 8.2e-13 77.8 51 64.7
Pp3c3_15280 Physcomitrium patens HOM05D004780 ORTHO05D005590 1.6e-11 73.6 47 70.2
Mapoly0002s0166 Marchantia polymorpha HOM05D004780 ORTHO05D005590 2.6e-11 72.8 45 71.1
ATR0022G036 Amborella trichopoda HOM05D004780 ORTHO05D005590 3.5e-11 72.4 48 64.6
Mapoly0040s0047 Marchantia polymorpha HOM05D004780 ORTHO05D005590 1.7e-10 70.1 59 57.6
Pp3c6_7200 Physcomitrium patens HOM05D004780 ORTHO05D005590 1.7e-10 70.1 44 70.5
SMO143G0215 Selaginella moellendorffii HOM05D004780 ORTHO05D005590 1.7e-10 70.1 47 63.8
SMO013G0022 Selaginella moellendorffii HOM05D004780 ORTHO05D005590 4.2e-09 65.5 51 58.8
Actinidia22642 Actinidia chinensis HOM05D004780 ORTHO05D005590 6.1e-08 61.6 96 43.8
Pp3c25_4180 Physcomitrium patens HOM05D004780 ORTHO05D005590 3.0e-07 59.3 46 63.0
Cc03_g01950 Coffea canephora HOM05D000668 ORTHO05D000516 8.8e-07 57.8 61 54.1
HanXRQChr13g0411301 Helianthus annuus HOM05D000668 ORTHO05D000516 1.5e-06 57.0 47 63.8
Ciclev10030160m.g Citrus clementina HOM05D000668 ORTHO05D000516 2.6e-06 56.2 48 60.4
Atru.chr10.1860 Acer truncatum HOM05D000668 ORTHO05D000516 3.3e-06 55.8 44 70.5
MD13G1168800 Malus domestica HOM05D000668 ORTHO05D000516 3.3e-06 55.8 106 36.8
Medtr4g088685 Medicago truncatula HOM05D000668 ORTHO05D000516 3.3e-06 55.8 47 61.7
CAN.G185.13 Capsicum annuum HOM05D000668 ORTHO05D000516 5.7e-06 55.1 52 57.7
Oeu012116.1 Olea europaea HOM05D000668 ORTHO05D000516 5.7e-06 55.1 51 58.8
Aqoxy5G00719 Aquilegia oxysepala HOM05D000668 ORTHO05D000516 7.5e-06 54.7 121 37.2
Rhsim02G0131000 Rhododendron simsii HOM05D000668 ORTHO05D000516 7.5e-06 54.7 53 60.4
CSS0034135 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 9.7e-06 54.3 47 59.6
Solyc01g067900.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 9.7e-06 54.3 47 61.7
Sopen01g029860 Solanum pennellii HOM05D000668 ORTHO05D000516 9.7e-06 54.3 47 61.7


User provided reference genes

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