Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.3e-127 458.0 229 100.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.1
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 94.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.3e-120 436.4 229 93.9
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 93.0
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 94.3
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.9e-119 432.6 227 92.5
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 92.1
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 92.1
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 92.5
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.5e-119 432.2 229 92.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 92.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 5.6e-119 431.0 229 92.1
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 5.6e-119 431.0 227 93.0
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 93.0
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 92.5
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 7.3e-119 430.6 229 91.7
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 9.6e-119 430.3 229 92.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 9.6e-119 430.3 227 92.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 9.6e-119 430.3 227 92.5
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 9.6e-119 430.3 229 91.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 92.5
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 92.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 92.1
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.4
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.6e-118 428.3 227 91.6
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 92.1
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 91.2
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 91.6
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 91.2
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 6.2e-118 427.6 229 90.8
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 91.2
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 92.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 91.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 91.2
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 91.7
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 92.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 90.7
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 90.7
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 92.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.4e-117 425.6 229 90.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 3.1e-117 425.2 229 90.0
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.1e-117 425.2 227 90.3
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.1e-117 425.2 226 91.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.1e-117 425.2 226 91.6
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 91.2
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 91.2
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 9.0e-117 423.7 229 89.5
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-116 423.3 226 91.2
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-116 423.3 227 91.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 2.0e-116 422.5 229 90.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 2.0e-116 422.5 229 89.1
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.0e-116 422.5 229 90.0
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.6e-116 422.2 227 89.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 2.6e-116 422.2 227 89.9
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 3.4e-116 421.8 229 90.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 5.8e-116 421.0 227 89.0
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 91.2
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.7e-115 419.5 228 89.9
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.7e-115 419.5 229 89.5
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 91.2
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.9e-114 416.0 229 88.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 4.2e-114 414.8 231 87.9
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.2e-114 414.8 229 88.2
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 5.4e-114 414.5 231 87.9
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 7.1e-114 414.1 220 90.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 87.3
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 89.0
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 87.7
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 85.9
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.8
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 86.3
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 7.4e-111 404.1 227 85.0
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.6e-110 402.9 227 86.3
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.1e-110 402.5 227 84.6
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.8e-110 402.1 229 86.9
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.8e-110 402.1 226 84.5
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 88.5
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 85.5
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 4.8e-110 401.4 226 85.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.4e-109 399.8 227 84.6
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.4e-109 399.8 236 83.9
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 2.4e-109 399.1 227 84.6
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 3.1e-109 398.7 228 82.9
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 3.1e-109 398.7 227 84.6
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 9.0e-109 397.1 227 84.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.0e-108 396.0 227 85.5
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 3.4e-108 395.2 227 84.1
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.7e-107 392.9 254 78.0
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.4e-106 389.8 227 83.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 81.9
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 3.3e-103 378.6 201 92.0
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.6e-102 376.3 204 90.2
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.1e-101 373.6 229 77.7
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.4e-101 373.2 202 90.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.0e-101 371.7 227 81.9
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 3.4e-100 368.6 201 90.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.9e-99 365.5 227 75.8
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 8.4e-99 364.0 196 92.9
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.9e-98 362.8 229 73.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 5.5e-98 361.3 190 93.2
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.1e-97 359.4 191 92.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 7.9e-97 357.5 200 87.5
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-96 356.3 226 73.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-96 356.3 226 73.5
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.3e-96 355.9 210 80.5
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.0e-96 355.5 189 91.5
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 3.0e-96 355.5 187 93.6
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 250 74.0
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 9.7e-95 350.5 190 90.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 9.7e-95 350.5 229 78.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.8e-94 349.0 227 76.2
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 6.3e-94 347.8 185 93.5
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.4e-93 346.7 231 78.4
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 3.4e-92 342.0 226 70.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 6.5e-91 337.8 185 88.6
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.2e-84 317.0 226 71.2
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.7e-83 313.2 162 93.8
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.2e-82 308.9 164 92.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.4e-80 303.5 355 49.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.9e-75 285.8 160 85.6
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.2e-67 259.6 160 75.6
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.3e-64 249.6 122 100.0
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.6e-57 226.9 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.7e-55 218.4 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.9e-35 152.5 140 57.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-27 127.1 69 88.4
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-23 112.8 62 79.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.9e-18 97.1 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.2e-17 94.4 124 49.2
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.5e-15 87.4 81 56.8
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.7e-12 76.6 79 49.4
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.8e-09 66.6 82 48.8
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 8.1e-09 65.1 49 65.3
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 7.6e-07 58.5 26 96.2
Oeu006165.1 Olea europaea HOM05D005468 ORTHO05D290159 6.4e-06 55.5 91 44.0


User provided reference genes

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