Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02605 Erythranthe guttata HOM05D008110 ORTHO05D000088 5.8e-111 404.4 235 100.0
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 3.6e-36 156.0 320 36.9
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 2.1e-20 103.6 98 50.0
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.8e-19 100.5 99 48.5
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.3e-19 100.1 98 49.0
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 3.0e-19 99.8 101 47.5
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.2e-18 97.8 96 47.9
Cc11_g01500 Coffea canephora HOM05D008110 ORTHO05D000088 2.0e-18 97.1 206 33.0
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 3.4e-18 96.3 92 50.0
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 1.7e-17 94.0 98 44.9
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.9e-17 93.2 106 40.6
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 8.3e-17 91.7 105 41.0
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 1.4e-16 90.9 90 48.9
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 2.4e-16 90.1 246 26.4
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 5.4e-16 89.0 93 41.9
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 1.6e-15 87.4 85 45.9
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 2.0e-15 87.0 110 42.7
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 3.5e-15 86.3 119 37.8
Solyc05g041100.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 7.8e-15 85.1 128 38.3
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.0e-14 84.7 93 44.1
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 1.3e-14 84.3 247 26.3
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 1.7e-14 84.0 119 36.1
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 3.0e-14 83.2 131 34.4
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 8.6e-14 81.6 103 41.7
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.1e-13 81.3 89 42.7
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 3.3e-13 79.7 91 46.2
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.6e-12 77.4 99 37.4
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.6e-12 77.4 99 37.4
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 2.1e-12 77.0 108 34.3
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.1e-12 77.0 100 40.0
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 2.8e-12 76.6 94 40.4
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 2.8e-12 76.6 210 25.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 8.0e-12 75.1 103 36.9
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 1.0e-11 74.7 92 41.3
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.0e-11 74.7 88 39.8
GSVIVG01023108001 Vitis vinifera HOM05D007130 ORTHO05D002078 1.0e-11 74.7 88 42.0
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 2.3e-11 73.6 122 32.0
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.3e-11 73.6 87 36.8
TWI31G0651 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.1e-11 73.2 89 40.4
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 5.2e-11 72.4 104 40.4
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.5e-10 70.9 64 51.6
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.6e-10 70.1 89 40.4
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 3.4e-10 69.7 99 34.3
vmacro02160 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 3.4e-10 69.7 74 43.2
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 5.8e-10 68.9 87 37.9
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 5.8e-10 68.9 112 33.0
Nn5g29405 Nelumbo nucifera HOM05D000823 ORTHO05D000088 7.5e-10 68.6 89 39.3
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 7.5e-10 68.6 92 37.0
Hund08735 Selenicereus undatus HOM05D000823 ORTHO05D000088 9.8e-10 68.2 126 31.7
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.7e-09 67.4 61 52.5
vmacro17896 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 1.7e-09 67.4 100 36.0
SalBow3G0306 Salvia bowleyana HOM05D008110 ORTHO05D000088 2.2e-09 67.0 101 38.6
Atru.chr5.2872 Acer truncatum HOM05D000823 ORTHO05D000088 2.9e-09 66.6 89 39.3
EL10Ac8g19102 Beta vulgaris HOM05D000823 ORTHO05D000088 3.7e-09 66.2 88 36.4
BolC9t54023H Brassica oleracea HOM05D000823 ORTHO05D000088 3.7e-09 66.2 89 38.2
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 3.7e-09 66.2 89 37.1
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 3.7e-09 66.2 108 34.3
DCAR_029047 Daucus carota HOM05D000823 ORTHO05D000088 4.9e-09 65.9 75 41.3
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 6.4e-09 65.5 99 34.3
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 8.3e-09 65.1 89 34.8
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 8.3e-09 65.1 114 31.6
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.3e-09 65.1 89 37.1
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.1e-08 64.7 114 30.7
BcaC06g34772 Brassica carinata HOM05D000823 ORTHO05D000088 1.4e-08 64.3 88 36.4
C07p24780 Brassica napus HOM05D000823 ORTHO05D000088 1.4e-08 64.3 88 36.4
Glyma.11G124200 Glycine max HOM05D000823 ORTHO05D000088 1.4e-08 64.3 99 31.3
Glyma.11G124300 Glycine max HOM05D000823 ORTHO05D000088 1.4e-08 64.3 99 30.3
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.9e-08 63.9 65 49.2
TPR.G15748 Trifolium pratense HOM05D000823 ORTHO05D000088 1.9e-08 63.9 83 34.9
Lj4C136T19 Lonicera japonica HOM05D000395 ORTHO05D000088 2.4e-08 63.5 99 35.4
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 3.2e-08 63.2 89 34.8
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 3.2e-08 63.2 89 31.5
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 3.2e-08 63.2 89 36.0
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 3.2e-08 63.2 107 30.8
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 3.2e-08 63.2 89 36.0
vmacro04665 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 3.2e-08 63.2 89 37.1
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 4.1e-08 62.8 115 31.3
CiPaw.01G027400 Carya illinoinensis HOM05D000823 ORTHO05D000088 4.1e-08 62.8 101 36.6
CDE04G1885 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 4.1e-08 62.8 114 34.2
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 4.1e-08 62.8 100 32.0
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 7.0e-08 62.0 85 32.9
Thhalv10004496m.g Eutrema salsugineum HOM05D000823 ORTHO05D000088 7.0e-08 62.0 98 33.7
Medtr1g021400 Medicago truncatula HOM05D000823 ORTHO05D000088 7.0e-08 62.0 83 34.9
Psat6g011640 Pisum sativum HOM05D000823 ORTHO05D000088 7.0e-08 62.0 100 30.0
Carub.0008s2753 Capsella rubella HOM05D000823 ORTHO05D000088 9.2e-08 61.6 118 30.5
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 9.2e-08 61.6 84 35.7
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 9.2e-08 61.6 90 32.2
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 1.2e-07 61.2 114 28.9
Duzib264G0448 Durio zibethinus HOM05D000823 ORTHO05D000088 1.2e-07 61.2 69 40.6
PGSC0003DMG400005934 Solanum tuberosum HOM05D000823 ORTHO05D000088 1.2e-07 61.2 90 34.4
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.2e-07 61.2 46 54.3
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.2e-07 61.2 84 38.1
A03p62870 Brassica napus HOM05D006628 ORTHO05D000088 1.6e-07 60.8 96 36.5
A07p16940 Brassica napus HOM05D000823 ORTHO05D000088 1.6e-07 60.8 88 34.1
BraA03t15364Z Brassica rapa HOM05D006628 ORTHO05D000088 1.6e-07 60.8 96 36.5
BraA07t29420Z Brassica rapa HOM05D000823 ORTHO05D000088 1.6e-07 60.8 88 34.1
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 1.6e-07 60.8 114 28.9
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 1.6e-07 60.8 89 33.7
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 2.0e-07 60.5 92 34.8
FvH4_2g27400 Fragaria vesca HOM05D000823 ORTHO05D000088 2.0e-07 60.5 99 32.3
Nn5g29400 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.0e-07 60.5 83 33.7
TPR.G23993 Trifolium pratense HOM05D010195 ORTHO05D000088 2.0e-07 60.5 90 38.9
AL8G44400 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 2.7e-07 60.1 108 31.5
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 2.7e-07 60.1 84 38.1
Eucgr.I01211 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.7e-07 60.1 90 33.3
FAN15G3419 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.7e-07 60.1 94 33.0
Medtr1g021330 Medicago truncatula HOM05D000823 ORTHO05D000088 2.7e-07 60.1 83 34.9
Medtr1g046200 Medicago truncatula HOM05D010195 ORTHO05D000088 2.7e-07 60.1 93 41.9
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 2.7e-07 60.1 73 43.8
Ah.09g231430 Amaranthus hybridus HOM05D017700 ORTHO05D000088 3.5e-07 59.7 71 38.0
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 3.5e-07 59.7 88 34.1
CARHR280710 Cardamine hirsuta HOM05D000823 ORTHO05D000088 3.5e-07 59.7 100 31.0
MBI16_g26333_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 3.5e-07 59.7 83 37.3
Medtr1g021350 Medicago truncatula HOM05D000823 ORTHO05D000088 3.5e-07 59.7 83 33.7
FAN20G0950 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.6e-07 59.3 99 32.3
FAN20G2013 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.6e-07 59.3 99 32.3
Lj6C562T8 Lonicera japonica HOM05D000823 ORTHO05D000088 4.6e-07 59.3 84 33.3
Os11g0197600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 4.6e-07 59.3 113 28.3
vmacro05287 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 4.6e-07 59.3 83 36.1
Medtr1g021360 Medicago truncatula HOM05D000823 ORTHO05D000088 6.0e-07 58.9 83 32.5
Medtr1g021440 Medicago truncatula HOM05D000823 ORTHO05D000088 6.0e-07 58.9 83 34.9
PSO675G8304 Papaver somniferum HOM05D000395 ORTHO05D000088 6.0e-07 58.9 104 29.8
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 6.0e-07 58.9 117 32.5
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 7.8e-07 58.5 98 33.7
TWI56G0922 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 7.8e-07 58.5 83 34.9
AUR62028979 Chenopodium quinoa HOM05D017700 ORTHO05D000088 1.0e-06 58.2 75 37.3
Glyma.03G246400 Glycine max HOM05D000823 ORTHO05D000088 1.0e-06 58.2 110 31.8
Thecc.08G016800 Theobroma cacao HOM05D000823 ORTHO05D000088 1.0e-06 58.2 99 30.3
unitig_61.g26370 Utricularia gibba HOM05D000823 ORTHO05D000088 1.0e-06 58.2 77 35.1
Aa31LG1G15520 Aethionema arabicum HOM05D000823 ORTHO05D000088 1.3e-06 57.8 103 31.1
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.3e-06 57.8 89 29.2
AUR62011404 Chenopodium quinoa HOM05D000823 ORTHO05D000088 1.3e-06 57.8 128 31.2
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 1.3e-06 57.8 82 31.7
Lj7A19G27 Lonicera japonica HOM05D000395 ORTHO05D000088 1.3e-06 57.8 80 35.0
Lj5g0024307 Lotus japonicus HOM05D000823 ORTHO05D000088 1.3e-06 57.8 85 34.1
Medtr1g021380 Medicago truncatula HOM05D000823 ORTHO05D000088 1.3e-06 57.8 108 31.5
Medtr1g046340 Medicago truncatula HOM05D010195 ORTHO05D000088 1.3e-06 57.8 90 38.9
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.3e-06 57.8 101 33.7
Sed0020190 Sechium edule HOM05D000823 ORTHO05D000088 1.3e-06 57.8 101 30.7
PGSC0003DMG400040208 Solanum tuberosum HOM05D000823 ORTHO05D000088 1.3e-06 57.8 88 34.1
TWI38G0162 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.3e-06 57.8 94 33.0
Ah.06g189660 Amaranthus hybridus HOM05D000823 ORTHO05D000088 1.7e-06 57.4 83 36.1
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 1.7e-06 57.4 90 33.3
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 1.7e-06 57.4 128 28.1
Hund06204 Selenicereus undatus HOM05D000823 ORTHO05D000088 1.7e-06 57.4 112 29.5
Eucgr.I01210 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.3e-06 57.0 98 31.6
Medtr1g021435 Medicago truncatula HOM05D000823 ORTHO05D000088 2.3e-06 57.0 83 36.1
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.3e-06 57.0 92 37.0
RhsimUnG0104500 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.3e-06 57.0 89 34.8
SalBow8G3609 Salvia bowleyana HOM05D000823 ORTHO05D000088 2.3e-06 57.0 116 31.9
TPR.G15760 Trifolium pratense HOM05D000823 ORTHO05D000088 2.3e-06 57.0 83 36.1
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 3.0e-06 56.6 96 34.4
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 3.0e-06 56.6 96 34.4
Medtr3g088515 Medicago truncatula HOM05D010195 ORTHO05D000088 3.0e-06 56.6 98 36.7
PSO541G0256 Papaver somniferum HOM05D000395 ORTHO05D000088 3.0e-06 56.6 81 32.1
Aqoxy3G02207 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 3.9e-06 56.2 86 31.4
CDE01G0565 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 3.9e-06 56.2 88 35.2
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 3.9e-06 56.2 89 33.7
Psat6g011600 Pisum sativum HOM05D000823 ORTHO05D000088 3.9e-06 56.2 83 32.5
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 5.0e-06 55.8 93 33.3
Lalb_Chr22g0355291 Lupinus albus HOM05D000823 ORTHO05D000088 5.0e-06 55.8 93 32.3
RcHm_v2.0_Chr6g0259321 Rosa chinensis HOM05D000823 ORTHO05D000088 5.0e-06 55.8 103 32.0
TPR.G34772 Trifolium pratense HOM05D010195 ORTHO05D000088 5.0e-06 55.8 89 37.1
VMungo0647G1636 Vigna mungo HOM05D000033 ORTHO05D002478 5.0e-06 55.8 82 37.8
FAN23G1978 Fragaria x ananassa HOM05D000823 ORTHO05D009132 6.6e-06 55.5 102 30.4
Gohir.A05G199000 Gossypium hirsutum HOM05D000823 ORTHO05D000088 6.6e-06 55.5 101 31.7
Gohir.D05G201700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 6.6e-06 55.5 101 31.7
Gorai.009G207400 Gossypium raimondii HOM05D000823 ORTHO05D000088 6.6e-06 55.5 101 31.7
Lsat_1_v5_gn_3_94221 Lactuca sativa HOM05D000823 ORTHO05D000088 6.6e-06 55.5 85 31.8
Nn6g32053 Nelumbo nucifera HOM05D000823 ORTHO05D000088 6.6e-06 55.5 83 33.7
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 6.6e-06 55.5 81 32.1
Sed0000312 Sechium edule HOM05D007907 ORTHO05D009079 6.6e-06 55.5 107 28.0
ATR0796G188 Amborella trichopoda HOM05D000823 ORTHO05D000088 8.6e-06 55.1 110 31.8
CsaV3_6G042820 Cucumis sativus L. HOM05D007907 ORTHO05D009079 8.6e-06 55.1 84 33.3
Gohir.D02G093100 Gossypium hirsutum HOM05D000823 ORTHO05D000088 8.6e-06 55.1 124 27.4
Prupe.7G064600 Prunus persica HOM05D000823 ORTHO05D000088 8.6e-06 55.1 88 31.8
TPR.G15734 Trifolium pratense HOM05D000823 ORTHO05D000088 8.6e-06 55.1 83 34.9


User provided reference genes

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