Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.3e-49 199.5 106 100.0
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 6.6e-22 107.5 107 51.4
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 4.7e-20 101.3 107 51.4
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 6.2e-20 100.9 107 50.5
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.1e-19 100.1 107 49.5
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.1e-19 100.1 107 51.4
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 3.1e-19 98.6 107 49.5
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 6.8e-19 97.4 107 50.5
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 6.8e-19 97.4 107 46.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 6.8e-19 97.4 101 52.5
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 6.8e-19 97.4 107 50.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.5e-18 96.3 107 47.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 48.6
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 48.6
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 46.7
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 46.7
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 48.6
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.0e-18 95.9 107 48.6
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.6e-18 95.5 108 48.1
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.6e-18 95.5 107 47.7
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.6e-18 95.5 107 44.9
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.6e-18 95.5 107 47.7
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.8e-18 94.4 107 45.8
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.5e-18 94.0 106 45.3
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 7.5e-18 94.0 107 45.8
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 7.5e-18 94.0 107 46.7
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 9.8e-18 93.6 107 46.7
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 9.8e-18 93.6 108 49.1
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 9.8e-18 93.6 107 47.7
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 1.3e-17 93.2 107 47.7
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.3e-17 93.2 107 46.7
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.7e-17 92.8 85 58.8
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.2e-17 92.4 107 46.7
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.2e-17 92.4 107 44.9
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.9e-17 92.0 107 47.7
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 2.9e-17 92.0 107 46.7
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 2.9e-17 92.0 107 46.7
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.9e-17 92.0 106 44.3
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 4.9e-17 91.3 107 46.7
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 4.9e-17 91.3 104 47.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 6.4e-17 90.9 107 43.9
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 8.3e-17 90.5 107 46.7
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 8.3e-17 90.5 107 43.0
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.1e-16 90.1 107 44.9
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-16 90.1 107 44.9
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-16 90.1 107 44.9
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.1e-16 90.1 107 43.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.4e-16 89.7 107 46.7
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.4e-16 89.7 107 45.8
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.4e-16 89.7 107 45.8
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.4e-16 89.7 87 55.2
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.9e-16 89.4 107 45.8
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.9e-16 89.4 104 47.1
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-16 88.6 107 44.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-16 88.6 107 46.7
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 5.4e-16 87.8 87 51.7
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.1e-16 87.4 107 44.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.1e-16 87.4 107 44.9
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 9.2e-16 87.0 106 49.1
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.6e-15 86.3 107 44.9
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 2.1e-15 85.9 103 46.6
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 3.5e-15 85.1 87 51.7
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 4.6e-15 84.7 92 48.9
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 4.6e-15 84.7 92 48.9
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.6e-15 84.7 106 45.3
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.6e-15 84.7 107 43.0
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 7.8e-15 84.0 87 52.9
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 7.8e-15 84.0 87 49.4
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-14 83.6 106 45.3
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-14 83.6 107 43.9
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 1.3e-14 83.2 108 43.5
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.3e-14 83.2 110 41.8
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.3e-14 82.4 107 40.2
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 3.0e-14 82.0 87 50.6
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 3.0e-14 82.0 107 43.0
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 3.9e-14 81.6 123 40.7
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 3.9e-14 81.6 107 41.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.9e-14 81.6 107 41.1
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.9e-14 81.6 87 48.3
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 6.6e-14 80.9 92 45.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 6.6e-14 80.9 85 50.6
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 8.6e-14 80.5 107 43.9
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 8.6e-14 80.5 108 44.4
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 8.6e-14 80.5 87 49.4
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 8.6e-14 80.5 82 53.7
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.1e-13 80.1 106 38.7
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.1e-13 80.1 107 42.1
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.1e-13 80.1 108 43.5
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.5e-13 79.7 91 48.4
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.5e-13 79.7 105 40.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.9e-13 79.3 92 44.6
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.9e-13 79.3 92 45.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.5e-13 79.0 85 49.4
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.5e-13 79.0 85 49.4
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.5e-13 79.0 105 37.1
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 3.3e-13 78.6 84 50.0
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 3.3e-13 78.6 92 44.6
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-13 78.2 93 48.4
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 4.3e-13 78.2 93 48.4
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.3e-13 78.2 107 40.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.3e-13 78.2 109 44.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 4.3e-13 78.2 105 40.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.3e-13 78.2 83 49.4
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 4.3e-13 78.2 106 40.6
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 5.6e-13 77.8 107 42.1
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.6e-13 77.8 93 48.4
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.6e-13 77.8 93 48.4
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 5.6e-13 77.8 87 47.1
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 7.3e-13 77.4 92 44.6
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.3e-13 77.4 96 42.7
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 9.5e-13 77.0 91 49.5
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 9.5e-13 77.0 91 49.5
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.2e-12 76.6 91 48.4
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.6e-12 76.3 102 43.1
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.6e-12 76.3 105 39.0
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.6e-12 76.3 106 38.7
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 2.1e-12 75.9 84 50.0
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 2.8e-12 75.5 106 46.2
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.8e-12 75.5 87 47.1
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 3.6e-12 75.1 90 47.8
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.7e-12 74.7 92 45.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 4.7e-12 74.7 93 46.2
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 4.7e-12 74.7 106 41.5
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.7e-12 74.7 89 43.8
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.1e-11 73.6 92 43.5
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.1e-11 73.6 97 46.4
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.8e-11 72.8 87 47.1
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.8e-11 72.8 107 40.2
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 1.8e-11 72.8 105 38.1
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 4.0e-11 71.6 75 49.3
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 6.8e-11 70.9 107 38.3
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 8.9e-11 70.5 94 40.4
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.2e-10 70.1 109 40.4
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.5e-10 69.7 90 46.7
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.5e-10 69.7 92 46.7
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 2.0e-10 69.3 109 39.4
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 2.6e-10 68.9 103 39.8
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 2.6e-10 68.9 88 40.9
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.6e-10 67.4 87 41.4
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.3e-09 66.6 87 41.4
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.3e-09 66.6 87 41.4
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.3e-09 66.6 109 38.5
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-09 66.2 87 41.4
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.9e-09 65.5 106 38.7
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 6.4e-09 64.3 97 43.3
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 6.4e-09 64.3 104 38.5
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 8.4e-09 63.9 77 48.1
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 8.4e-09 63.9 116 37.1
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.4e-08 63.2 107 36.4
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.4e-08 63.2 78 44.9
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 1.9e-08 62.8 70 45.7
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.2e-08 62.0 112 39.3
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.2e-08 62.0 107 34.6
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 4.1e-08 61.6 127 32.3
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 4.1e-08 61.6 92 39.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.1e-08 61.6 88 42.0
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 9.2e-08 60.5 107 33.6
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.2e-07 60.1 111 38.7
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 2.1e-07 59.3 92 35.9
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 2.7e-07 58.9 105 38.1
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 6.0e-07 57.8 86 38.4
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 6.0e-07 57.8 84 38.1
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 7.8e-07 57.4 112 38.4
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 7.8e-07 57.4 112 38.4
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.7e-06 56.2 100 38.0
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.7e-06 56.2 87 36.8
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 3.0e-06 55.5 86 38.4
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 5.1e-06 54.7 140 28.6
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 5.1e-06 54.7 66 43.9


User provided reference genes

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