Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.4e-122 443.0 230 100.0
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 1.1e-109 400.2 224 93.8
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.1e-109 398.7 225 92.9
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.2e-108 396.7 231 91.3
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 2.0e-108 396.0 226 92.5
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 91.1
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 91.1
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 3.8e-107 391.7 224 91.5
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 3.8e-107 391.7 225 91.1
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.8e-107 391.7 233 88.4
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 5.0e-107 391.3 227 91.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 8.5e-107 390.6 228 91.2
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.4e-106 389.8 224 90.6
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.4e-106 389.8 224 91.1
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.4e-106 389.8 224 91.1
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.9e-106 389.4 231 88.7
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 1.9e-106 389.4 224 90.2
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 2.5e-106 389.0 231 87.4
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 3.2e-106 388.7 226 89.4
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 4.2e-106 388.3 226 89.4
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 4.2e-106 388.3 224 91.1
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 4.2e-106 388.3 225 89.3
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 5.5e-106 387.9 229 88.2
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 7.2e-106 387.5 224 91.1
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 7.2e-106 387.5 224 90.2
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 7.2e-106 387.5 232 87.5
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 7.2e-106 387.5 219 91.3
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 9.4e-106 387.1 218 92.7
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 9.4e-106 387.1 225 90.2
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.2e-105 386.7 231 89.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.2e-105 386.7 228 89.0
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.2e-105 386.7 230 87.4
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.1e-105 386.0 224 89.7
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.1e-105 386.0 224 88.8
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.1e-105 386.0 219 90.9
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 3.6e-105 385.2 220 91.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.6e-105 385.2 228 90.4
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 4.6e-105 384.8 224 90.2
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 4.6e-105 384.8 230 87.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.1e-105 384.4 227 89.4
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 7.9e-105 384.0 224 90.2
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 7.9e-105 384.0 225 88.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 7.9e-105 384.0 231 89.2
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 7.9e-105 384.0 232 87.1
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.0e-104 383.6 222 91.4
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.8e-104 382.9 225 88.9
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.8e-104 382.9 224 89.7
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.8e-104 382.9 228 87.3
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 1.8e-104 382.9 224 88.8
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 3.0e-104 382.1 234 87.2
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.9e-104 381.7 225 88.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.9e-104 381.7 225 88.9
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 3.9e-104 381.7 224 88.8
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.9e-104 381.7 227 88.5
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 224 88.8
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 6.7e-104 380.9 224 88.8
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 6.7e-104 380.9 227 88.1
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 6.7e-104 380.9 224 88.8
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 8.8e-104 380.6 227 88.5
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 8.8e-104 380.6 230 86.5
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 8.8e-104 380.6 224 88.8
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.1e-103 380.2 225 88.4
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.1e-103 380.2 222 88.7
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.9e-103 379.4 225 88.0
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.5e-103 379.0 229 86.9
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.5e-103 379.0 225 88.4
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.5e-103 379.0 228 88.2
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.5e-103 379.0 225 87.1
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.3e-103 378.6 230 86.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 3.3e-103 378.6 231 87.9
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.3e-103 378.6 226 88.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.3e-103 378.3 225 88.0
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 5.7e-103 377.9 225 88.9
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 5.7e-103 377.9 228 86.8
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.7e-103 377.9 221 89.6
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 7.4e-103 377.5 230 86.1
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.3e-102 376.7 229 86.0
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 2.2e-102 375.9 224 87.9
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.2e-102 375.9 224 87.9
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.8e-102 375.6 225 88.4
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 87.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 87.9
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 87.9
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 6.3e-102 374.4 224 87.5
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 6.3e-102 374.4 221 88.2
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 8.2e-102 374.0 229 85.2
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 8.2e-102 374.0 228 86.4
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 205 95.1
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.1e-101 373.6 228 85.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.1e-101 373.6 227 86.8
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.1e-101 373.6 228 86.8
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 87.6
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.8e-101 372.9 224 87.5
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.4e-101 372.5 227 85.5
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 3.1e-101 372.1 228 86.4
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 5.3e-101 371.3 229 86.5
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-100 370.2 228 85.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 225 84.9
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.6e-100 369.0 206 92.7
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 4.5e-100 368.2 228 85.5
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.9e-100 367.9 210 90.5
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.9e-100 367.9 223 84.3
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 5.9e-100 367.9 229 82.5
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.7e-100 367.5 254 78.7
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.0e-99 367.1 203 94.1
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.9e-99 365.5 228 84.2
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 4.2e-98 361.7 228 83.8
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 5.5e-98 361.3 222 84.2
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.2e-97 360.1 214 85.5
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 3.6e-97 358.6 224 82.1
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.8e-96 356.3 306 67.3
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.3e-94 350.1 222 83.8
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 5.5e-90 334.7 231 80.1
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.4e-88 330.1 187 92.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 6.3e-86 321.2 219 75.8
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 1.1e-85 320.5 205 80.0
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.7e-81 305.8 190 86.8
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 6.1e-81 304.7 212 75.9
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.4e-80 303.5 179 90.5
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.9e-75 285.8 194 80.9
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 3.8e-75 285.4 163 92.6
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 8.5e-75 284.3 211 72.0
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 5.5e-74 281.6 192 79.7
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.7e-73 278.5 159 92.5
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 6.1e-73 278.1 174 81.6
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 8.0e-73 277.7 156 93.6
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.0e-72 277.3 156 92.9
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.8e-72 276.6 156 91.7
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.7e-70 268.9 184 76.1
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.1e-69 265.4 179 77.7
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 2.7e-68 262.7 161 86.3
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 4.5e-60 235.3 157 78.3
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.7e-54 215.7 124 89.5
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.4e-53 211.8 161 72.7
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.5e-44 182.6 103 93.2
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.9e-43 179.1 110 88.2
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 9.5e-42 174.5 103 91.3
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-36 157.1 156 59.0
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 8.1e-33 144.8 88 88.6
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 2.1e-28 130.2 127 59.1
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 3.6e-25 119.4 206 39.3
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.4e-24 116.7 64 90.6
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-22 110.9 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 1.9e-18 97.1 63 77.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.8e-16 90.5 66 72.7
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 7.6e-15 85.1 60 71.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 3.9e-11 72.8 50 74.0


User provided reference genes

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