Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.9e-96 354.8 175 100.0
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.4e-77 292.4 172 84.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 8.5e-75 283.9 168 81.0
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.3e-72 275.8 178 75.3
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.1e-71 273.5 171 76.6
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.3e-71 271.9 182 73.6
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.3e-71 271.9 172 78.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.4e-69 266.5 173 76.3
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.4e-69 266.5 182 74.2
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 2.4e-69 265.8 181 73.5
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 4.1e-69 265.0 182 73.1
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 5.3e-69 264.6 181 71.3
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 7.0e-69 264.2 168 75.0
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 9.1e-69 263.8 166 76.5
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.2e-68 263.5 179 73.2
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.2e-68 263.5 166 77.7
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.2e-68 263.5 172 76.2
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.5e-68 263.1 183 72.7
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.6e-68 262.3 184 70.1
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.5e-68 261.9 167 74.3
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 3.5e-68 261.9 170 74.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 4.5e-68 261.5 184 70.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 7.7e-68 260.8 180 72.2
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 7.7e-68 260.8 183 71.0
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.0e-67 260.4 182 72.5
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.0e-67 260.4 174 73.6
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.7e-67 259.6 168 73.2
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.7e-67 259.6 168 73.8
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.7e-67 259.6 168 73.2
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.7e-67 259.6 168 73.2
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 2.2e-67 259.2 167 71.9
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.2e-67 259.2 168 73.2
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 2.2e-67 259.2 187 70.1
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.2e-67 259.2 180 71.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 2.2e-67 259.2 169 73.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.2e-67 259.2 169 74.0
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.2e-67 259.2 180 70.6
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.9e-67 258.8 170 74.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 3.8e-67 258.5 169 76.9
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 5.0e-67 258.1 168 75.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 6.5e-67 257.7 181 70.7
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 6.5e-67 257.7 169 71.6
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 6.5e-67 257.7 166 74.1
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 8.5e-67 257.3 169 72.8
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.5e-66 256.5 170 74.1
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.5e-66 256.5 169 73.4
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.5e-66 256.5 179 69.3
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.5e-66 256.5 181 69.6
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.5e-66 256.5 179 72.6
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.5e-66 256.5 166 74.1
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.9e-66 256.1 182 71.4
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.9e-66 256.1 166 74.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.2e-66 255.4 179 69.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 4.2e-66 255.0 166 74.1
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 5.5e-66 254.6 178 71.3
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 5.5e-66 254.6 180 69.4
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 5.5e-66 254.6 167 76.0
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 5.5e-66 254.6 173 72.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 5.5e-66 254.6 166 74.1
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 9.4e-66 253.8 168 76.2
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.2e-65 253.4 177 70.1
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.6e-65 253.1 179 68.7
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.1e-65 252.7 180 68.9
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.1e-65 252.7 180 68.9
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 3.6e-65 251.9 164 71.3
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 3.6e-65 251.9 167 73.1
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 3.6e-65 251.9 167 75.4
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 4.7e-65 251.5 180 68.9
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 4.7e-65 251.5 167 71.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 4.7e-65 251.5 166 74.1
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.7e-65 251.5 181 69.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.0e-65 250.8 166 72.9
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.0e-64 250.4 170 71.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.0e-64 250.4 175 69.1
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.0e-64 250.4 168 75.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.4e-64 250.0 167 71.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.4e-64 250.0 186 66.7
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.8e-64 249.6 166 74.1
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 2.3e-64 249.2 170 71.8
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.3e-64 249.2 185 66.5
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 3.0e-64 248.8 179 68.7
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 3.0e-64 248.8 179 68.7
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.0e-64 248.8 183 66.7
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.5e-63 246.5 169 69.8
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.6e-63 245.7 180 69.4
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.6e-63 245.7 178 67.4
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 3.3e-63 245.4 164 72.0
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 3.3e-63 245.4 164 72.0
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.4e-63 245.0 164 72.6
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 5.7e-63 244.6 184 64.7
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 9.7e-63 243.8 164 72.0
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.2e-62 242.7 166 70.5
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-61 240.4 180 66.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.1e-61 240.4 180 66.7
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.8e-61 239.6 168 67.3
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.1e-61 238.8 182 63.7
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.6e-60 235.7 169 65.1
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.7e-59 233.0 164 68.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.2e-57 226.9 183 61.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 8.0e-57 224.2 183 60.1
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.4e-56 223.4 123 83.7
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 5.2e-56 221.5 161 64.6
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 9.8e-55 217.2 147 70.1
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.8e-54 215.7 173 62.4
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 4.5e-52 208.4 179 60.9
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 7.7e-52 207.6 165 57.6
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 7.2e-50 201.1 143 67.8
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 8.0e-49 197.6 169 63.3
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.3e-48 196.1 186 58.1
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 6.8e-48 194.5 155 61.9
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 7.5e-47 191.0 185 53.0
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 5.4e-45 184.9 120 73.3
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 2.0e-44 183.0 144 59.7
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.0e-43 180.6 166 56.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-43 180.3 119 71.4
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 3.8e-43 178.7 154 56.5
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.9e-42 176.4 143 58.0
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.0e-39 166.4 111 73.9
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.4e-39 165.2 122 68.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 5.4e-37 158.3 91 84.6
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.0e-35 154.1 129 53.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 5.2e-32 141.7 183 46.4
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.0e-31 139.8 151 46.4
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 2.6e-31 139.4 83 80.7
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.2e-30 136.3 126 51.6
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 6.0e-28 128.3 179 44.7
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 6.0e-28 128.3 179 44.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 2.8e-25 119.4 148 45.3
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.5e-23 113.6 164 42.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 8.3e-22 107.8 75 69.3
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.9e-18 96.7 148 39.2
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.9e-18 96.7 148 39.2
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.5e-18 96.3 55 80.0
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.1e-17 93.2 114 39.5
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 4.0e-16 89.0 58 72.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.4e-08 63.9 55 52.7


User provided reference genes

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