Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 0.0e+00 1190.6 605 100.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.4e-278 960.7 605 79.8
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.5e-272 942.6 605 78.8
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-266 922.9 602 76.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 5.1e-244 847.8 597 73.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.1e-241 840.1 605 72.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.3e-239 833.2 595 72.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 7.9e-237 823.9 626 70.8
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.5e-231 804.3 591 68.9
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.1e-229 799.3 598 68.2
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.0e-228 797.0 595 68.7
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.0e-228 795.4 613 66.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 6.7e-228 794.3 607 67.5
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.5e-227 793.1 594 67.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.3e-227 792.0 591 68.4
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.8e-226 788.9 613 68.0
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.7e-226 788.5 591 68.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 3.7e-226 788.5 607 67.1
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 6.3e-226 787.7 606 66.8
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.4e-224 781.9 596 67.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.7e-223 779.6 607 65.7
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.7e-223 779.6 593 66.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.5e-222 775.8 614 66.1
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.2e-221 773.5 593 65.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.3e-219 765.0 594 66.8
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 6.3e-218 761.1 612 64.7
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 8.2e-218 760.8 599 64.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.8e-217 759.6 612 64.5
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.7e-216 754.2 606 64.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.9e-214 749.6 597 64.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.2e-213 746.9 604 64.6
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.6e-213 746.5 606 63.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.6e-213 745.3 607 64.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.6e-213 745.0 605 64.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 7.9e-213 744.2 621 63.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.0e-212 743.8 597 64.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.3e-212 742.7 521 70.8
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.9e-212 741.9 606 63.7
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.9e-212 741.9 590 63.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 5.1e-212 741.5 593 63.6
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 6.7e-212 741.1 589 64.2
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.1e-211 740.3 513 71.7
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.0e-211 739.6 589 64.3
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 5.7e-211 738.0 588 61.9
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 5.7e-211 738.0 607 63.9
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.8e-210 735.7 606 63.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.4e-209 733.4 609 61.9
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 6.9e-209 731.1 591 63.3
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-208 730.3 609 61.2
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.6e-208 729.2 599 62.3
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-206 723.8 607 63.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 7.2e-206 721.1 620 58.5
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 9.4e-206 720.7 516 68.4
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.9e-205 717.6 607 62.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.8e-204 716.5 586 63.0
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.3e-204 716.1 607 62.4
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.5e-203 713.4 593 61.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.2e-202 709.5 590 65.1
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.3e-202 708.0 587 63.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.6e-200 702.6 595 62.5
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.3e-199 700.3 792 49.9
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.5e-199 698.0 607 61.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 9.4e-198 694.1 587 59.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.7e-197 692.6 662 57.1
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.4e-196 690.3 607 61.4
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 3.0e-196 689.1 553 64.0
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.5e-195 684.5 604 59.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 9.7e-195 684.1 595 60.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.8e-194 681.8 586 60.6
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 8.2e-194 681.0 602 58.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.4e-193 680.2 602 57.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.4e-193 680.2 603 58.0
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.8e-193 679.9 591 59.7
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.4e-193 679.5 606 57.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.4e-193 679.5 596 59.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 4.1e-193 678.7 596 57.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.0e-192 676.4 592 57.6
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.7e-192 676.0 605 57.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.5e-192 675.2 592 57.8
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 7.7e-192 674.5 592 57.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.7e-186 655.6 579 57.3
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-184 649.4 577 56.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.3e-183 647.1 561 62.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 5.0e-183 645.2 578 56.6
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 6.5e-183 644.8 524 60.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.5e-182 642.9 608 57.1
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.6e-176 623.6 628 55.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.6e-173 612.5 561 57.4
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.3e-170 604.0 517 59.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.2e-170 603.2 484 62.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.3e-166 588.2 600 52.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.1e-164 582.8 637 51.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.8e-163 577.8 606 51.7
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.0e-161 571.6 587 51.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 7.8e-160 568.2 472 63.3
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.9e-159 565.8 600 49.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.3e-158 561.6 356 76.7
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.6e-126 454.9 447 52.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 8.4e-122 441.8 391 57.3
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.4e-116 423.7 502 45.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.0e-115 420.6 564 42.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.4e-115 419.9 304 68.1
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.1e-112 410.6 354 59.0
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 5.1e-111 406.0 517 42.4
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.8e-109 400.2 526 40.5
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.4e-86 323.2 279 61.6
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.2e-81 307.0 405 44.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.7e-77 294.7 216 70.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 5.3e-76 289.7 216 67.1
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.0e-74 285.4 291 52.9
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.5e-73 281.6 579 31.8
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.6e-72 278.1 301 46.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 5.2e-71 273.1 177 78.5
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 3.5e-67 260.4 388 35.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.0e-54 218.0 187 62.6
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.2e-40 169.9 123 62.6
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.3e-37 162.2 112 70.5
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.4e-36 156.8 112 70.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.6e-35 153.7 269 38.3
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 7.8e-35 152.9 125 64.8
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.8e-31 141.7 106 67.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.4e-28 132.1 100 64.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.6e-27 128.6 579 22.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.1e-24 118.2 141 41.8
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 5.2e-23 113.6 171 40.9
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 4.4e-22 110.5 254 31.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 7.6e-22 109.8 80 61.2
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.8e-21 107.5 71 71.8
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.8e-21 107.5 80 60.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 3.8e-21 107.5 82 59.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.5e-19 100.9 131 43.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.0e-18 97.8 130 40.8
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.9e-17 95.1 98 44.9
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 9.6e-17 92.8 86 50.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 4.5e-14 84.0 265 27.2
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 6.0e-11 73.6 152 33.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.3e-10 71.6 58 62.1
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 3.9e-10 70.9 138 36.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-09 68.9 60 56.7
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 2.8e-08 64.7 438 22.6
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.7e-08 64.3 109 36.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 4.8e-08 63.9 88 44.3
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 6.2e-08 63.5 82 43.9


User provided reference genes

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