Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 7.8e-200 700.3 361 100.0
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.2e-155 553.5 359 78.8
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.8e-141 505.0 358 71.8
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 6.5e-138 494.6 360 69.2
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.5e-137 492.7 358 67.9
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.6e-136 488.8 357 69.2
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.0e-135 487.3 358 66.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.8e-135 486.5 358 68.7
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.8e-135 486.5 358 67.6
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.0e-134 483.0 359 67.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 4.4e-134 481.9 358 67.0
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.7e-134 481.5 358 66.5
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 7.5e-134 481.1 358 67.3
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.2e-133 479.6 358 67.3
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.7e-133 478.8 358 69.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.7e-133 478.8 358 69.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 3.7e-133 478.8 358 65.6
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 4.8e-133 478.4 358 67.3
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 8.3e-133 477.6 357 67.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 2.4e-132 476.1 359 66.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 4.1e-132 475.3 358 67.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.5e-131 471.9 359 66.9
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.0e-130 470.7 357 66.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.3e-130 470.3 359 66.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.9e-130 469.2 359 65.2
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.9e-130 469.2 359 66.3
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 5.0e-130 468.4 358 66.5
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 8.5e-130 467.6 358 64.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.5e-129 466.1 360 64.7
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.5e-129 466.1 358 64.5
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 7.2e-129 464.5 358 65.9
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 9.4e-129 464.2 356 66.3
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.2e-128 463.8 358 66.8
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.6e-128 463.4 358 65.9
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.6e-128 463.4 358 65.9
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.7e-128 462.6 358 62.6
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.6e-128 462.2 358 64.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 8.0e-128 461.1 358 65.4
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.0e-127 459.1 358 64.5
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.0e-127 458.8 358 65.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 5.2e-127 458.4 358 65.9
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.5e-126 456.8 359 64.3
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.6e-126 456.1 358 64.5
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.3e-125 453.8 358 64.2
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 2.2e-125 453.0 362 63.8
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 8.3e-125 451.1 358 64.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.4e-124 449.5 359 63.0
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.4e-124 449.5 387 60.5
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 4.1e-124 448.7 358 62.6
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.1e-124 448.7 358 64.2
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 7.0e-124 448.0 358 62.6
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.6e-123 446.8 359 63.0
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.6e-123 446.8 359 63.0
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 2.0e-123 446.4 358 62.6
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.7e-123 446.0 358 62.6
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 3.5e-123 445.7 358 65.1
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.5e-123 445.7 362 63.3
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 5.9e-123 444.9 363 62.0
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 7.7e-123 444.5 359 62.7
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.5e-121 439.5 359 64.1
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.5e-121 439.5 358 62.6
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.5e-121 439.5 358 62.3
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 4.3e-121 438.7 358 61.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 9.5e-121 437.6 358 61.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.0e-119 434.1 358 62.0
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 5.2e-119 431.8 358 61.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 6.8e-119 431.4 358 60.9
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.5e-118 430.3 315 68.9
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.5e-118 430.3 358 62.6
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 4.4e-118 428.7 358 60.9
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 2.9e-117 426.0 358 60.3
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.7e-117 425.6 387 57.4
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.1e-116 424.1 357 61.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.1e-116 422.2 357 60.8
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 5.4e-116 421.8 358 59.8
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 2.0e-115 419.9 360 59.2
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 6.6e-114 414.8 357 60.8
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 6.6e-114 414.8 358 58.1
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 7.3e-113 411.4 357 59.7
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 8.0e-112 407.9 358 60.1
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.0e-111 405.6 362 59.4
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.5e-110 403.7 358 58.7
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 7.5e-110 401.4 356 59.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.9e-108 396.7 373 57.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 3.2e-108 396.0 475 49.7
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.7e-107 392.9 377 56.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.3e-106 390.6 354 59.0
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.2e-102 377.5 361 54.3
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 4.4e-102 375.6 356 53.1
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.6e-94 349.7 354 49.4
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 5.1e-90 335.5 359 51.8
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 6.2e-88 328.6 260 63.5
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.7e-85 320.5 259 62.2
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 6.4e-85 318.5 377 45.4
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.1e-84 317.8 254 61.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.4e-84 317.4 254 64.2
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.1e-81 307.8 357 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.3e-81 305.8 357 44.0
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.6e-80 303.9 366 45.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.4e-79 300.1 358 48.6
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.2e-75 287.7 294 54.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 7.9e-75 285.0 346 43.9
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.3e-73 279.3 356 43.8
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.8e-71 273.9 202 63.9
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.5e-70 269.2 348 40.8
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.6e-67 259.2 356 39.9
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.1e-64 250.4 358 39.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.0e-61 241.5 202 61.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.5e-45 185.3 147 63.9
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.4e-42 177.9 149 60.4
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 3.0e-34 150.2 403 30.0
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 6.7e-34 149.1 216 43.5
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.1e-33 148.3 186 46.2
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 4.5e-30 136.3 99 63.6
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 6.5e-29 132.5 105 61.9
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 7.2e-28 129.0 93 68.8
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.8e-26 124.4 360 26.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.0e-26 123.6 84 69.0
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.2e-24 117.5 130 48.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 2.4e-23 114.0 99 58.6
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 5.3e-23 112.8 154 44.8
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 7.7e-22 109.0 92 62.0
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.3e-18 97.4 93 59.1
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.3e-18 97.4 92 59.8
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 3.0e-18 97.1 51 86.3
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.5e-17 94.7 136 44.1
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-15 88.6 114 49.1
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 4.1e-15 86.7 95 47.4
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 4.1e-15 86.7 95 47.4
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.1e-15 85.5 94 53.2
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 5.5e-12 76.3 90 47.8


User provided reference genes

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