Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 9.9e-289 996.1 516 100.0
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 3.8e-200 701.8 516 71.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.3e-179 633.6 521 66.0
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.4e-173 613.6 520 63.3
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.1e-159 567.4 520 58.3
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 2.5e-159 566.2 518 59.1
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 5.8e-156 555.1 520 57.5
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 2.5e-151 539.7 516 58.3
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.3e-150 537.3 521 56.6
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.8e-147 525.8 520 55.8
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.1e-146 524.2 519 55.5
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.9e-144 515.8 519 54.5
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 6.7e-144 515.0 481 56.8
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.9e-143 513.5 608 49.0
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 2.8e-142 509.6 516 55.2
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 6.9e-141 505.0 516 51.7
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.2e-140 504.2 528 53.6
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 7.6e-140 501.5 519 53.0
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.1e-137 493.4 519 52.4
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.5e-137 492.7 520 53.7
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 1.0e-136 491.1 518 52.7
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 1.3e-136 490.7 519 52.2
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 2.3e-136 490.0 525 52.8
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 3.0e-136 489.6 519 52.6
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 3.0e-136 489.6 517 52.2
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.1e-135 487.6 520 51.2
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 9.7e-135 484.6 526 51.1
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 6.3e-134 481.9 519 52.4
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.4e-133 479.9 519 51.8
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 4.5e-132 475.7 528 51.1
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 5.9e-132 475.3 524 52.1
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 5.9e-132 475.3 524 51.0
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 6.5e-131 471.9 527 52.6
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.1e-129 466.8 515 52.4
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.1e-129 465.3 522 50.4
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 1.0e-128 464.5 520 51.5
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.0e-128 464.5 521 49.1
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.4e-128 464.2 485 54.4
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.3e-128 463.4 516 51.2
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.8e-128 461.5 521 52.4
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 5.7e-127 458.8 603 46.4
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 4.8e-126 455.7 446 55.6
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 4.8e-126 455.7 505 50.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 6.3e-126 455.3 556 48.9
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 9.1e-125 451.4 457 53.4
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.2e-124 451.1 450 55.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-124 451.1 471 51.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 6.5e-123 445.3 574 47.7
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.2e-122 443.0 438 55.0
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.6e-121 439.5 527 44.6
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.0e-120 438.0 574 47.4
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.3e-118 431.0 519 47.8
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.1e-117 427.9 519 46.8
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 4.1e-117 426.0 519 46.6
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 7.0e-117 425.2 472 49.8
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.0e-116 423.7 389 57.1
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 7.7e-116 421.8 518 45.9
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.9e-115 419.9 507 47.7
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 1.4e-114 417.5 481 50.5
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.9e-114 417.2 521 46.4
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 7.2e-114 415.2 524 46.6
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 9.4e-114 414.8 526 47.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.6e-113 414.1 524 45.6
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.7e-113 413.3 446 52.5
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-112 411.0 496 48.8
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.8e-112 410.6 496 48.8
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.8e-112 410.6 480 50.2
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.3e-112 410.2 443 51.7
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.3e-112 410.2 451 49.0
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.0e-112 409.8 483 49.5
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 3.0e-112 409.8 496 48.6
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 3.0e-112 409.8 442 49.5
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 3.9e-112 409.5 519 45.1
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.1e-111 407.9 446 52.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 5.7e-111 405.6 445 51.0
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.7e-111 405.6 444 51.1
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 8.2e-110 401.7 455 50.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 8.2e-110 401.7 446 51.3
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.4e-109 400.2 457 50.5
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 3.1e-109 399.8 455 50.5
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 3.1e-109 399.8 455 50.5
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.2e-108 397.9 525 44.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.6e-108 396.7 455 51.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 4.5e-108 396.0 516 46.5
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 5.9e-108 395.6 453 51.0
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.2e-107 393.7 529 43.9
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 5.0e-107 392.5 390 59.2
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 8.5e-107 391.7 477 47.0
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.8e-104 384.0 535 41.7
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.7e-103 379.0 347 56.2
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.1e-101 374.8 472 46.2
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.0e-96 356.7 521 39.7
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 4.8e-94 349.4 465 44.5
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 6.3e-94 349.0 373 49.6
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 7.0e-93 345.5 447 44.7
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.7e-92 343.6 378 49.5
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 5.2e-88 329.3 520 41.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 2.2e-86 323.9 380 44.7
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.4e-85 321.2 284 59.9
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 7.8e-84 315.5 525 39.2
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 7.3e-82 308.9 451 40.1
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.1e-77 295.0 204 74.0
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 6.4e-70 269.2 495 33.7
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-55 221.9 262 48.5
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 3.4e-55 220.3 189 62.4
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.5e-50 204.1 284 45.4
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.8e-49 199.9 283 42.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 5.3e-48 196.4 467 31.3
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 8.4e-46 189.1 470 30.9
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 7.1e-45 186.0 455 31.6
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.7e-44 184.1 216 44.9
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 2.5e-42 177.6 496 28.0
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.3e-42 177.2 142 61.3
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 4.9e-38 163.3 141 57.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.6e-36 156.8 269 41.3
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 5.6e-34 149.8 314 33.4
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 3.7e-33 147.1 119 60.5
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.5e-31 140.2 125 57.6
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.1e-29 135.6 277 33.9
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.3e-26 123.6 121 53.7
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.3e-14 85.5 143 35.7
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-10 72.4 75 48.0
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.3e-10 70.9 75 48.0
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 4.3e-10 70.5 145 35.9
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 7.7e-07 59.7 158 31.0
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.3e-06 58.9 87 39.1


User provided reference genes

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