Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1328.9 640 100.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1175.2 609 87.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1167.1 611 86.9
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1167.1 613 86.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1153.7 637 83.4
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1151.0 611 85.3
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1142.5 611 84.3
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 615 84.1
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 614 83.6
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1131.3 612 83.8
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1130.2 609 83.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 615 82.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 610 83.6
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 609 84.2
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1125.9 611 83.6
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1122.8 615 82.4
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1117.8 614 81.1
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 625 81.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1110.9 611 83.8
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 611 83.0
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1108.2 611 82.2
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1108.2 604 82.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1106.7 617 81.7
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1106.3 611 81.8
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1105.9 604 83.1
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1103.6 609 82.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1102.8 611 81.3
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1101.7 609 82.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1100.9 611 82.2
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1100.5 604 81.6
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 601 82.0
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 615 81.5
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1099.0 609 81.4
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 615 81.3
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1095.5 612 80.4
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 610 80.8
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 610 80.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1090.1 611 81.3
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 611 80.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1088.2 601 81.0
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1085.9 611 81.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 614 81.1
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 613 80.1
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 613 79.6
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1077.4 613 79.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1076.6 604 81.0
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 612 80.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.4e-312 1074.7 604 80.5
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 6.6e-311 1070.1 638 75.5
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 8.8e-311 1069.7 582 83.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 612 79.6
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.8e-309 1064.7 611 79.9
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 6.2e-309 1063.5 754 67.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 8.2e-309 1063.1 823 63.2
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 601 81.9
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.0e-308 1060.8 588 81.8
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.0e-307 1058.5 584 81.7
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 6.5e-306 1053.5 590 81.2
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.6e-304 1048.9 613 77.5
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 4.6e-304 1047.3 612 76.8
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 6.0e-304 1047.0 560 85.9
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 613 77.2
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 611 78.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 612 77.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 3.0e-303 1044.6 612 76.6
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 3.0e-303 1044.6 612 76.6
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 3.9e-303 1044.3 612 76.6
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 3.9e-303 1044.3 612 76.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 2.2e-301 1038.5 640 74.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.2e-301 1038.5 612 77.3
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.8e-301 1037.3 660 72.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 6.3e-301 1036.9 612 77.0
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.1e-300 1036.2 612 77.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.1e-300 1034.2 595 78.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 9.0e-300 1033.1 612 76.6
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.6e-299 1031.6 640 73.9
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 4.5e-299 1030.8 611 76.4
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 4.5e-299 1030.8 609 76.5
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.5e-298 1026.9 615 75.8
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.0e-295 1019.6 722 67.9
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.2e-291 1006.1 615 75.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.0e-287 993.0 621 74.9
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.8e-287 992.3 556 80.9
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.7e-285 984.6 650 71.5
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.7e-282 975.7 572 77.4
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.2e-282 975.3 650 70.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.5e-278 962.6 527 82.9
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.8e-276 955.7 521 84.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 2.4e-276 955.3 562 78.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.0e-275 952.2 571 77.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 7.7e-275 950.3 518 83.2
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.2e-274 948.7 546 80.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.7e-270 934.1 518 82.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 7.7e-267 923.7 585 73.7
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.2e-265 918.3 587 73.9
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.7e-264 914.4 549 75.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.8e-263 912.5 608 70.6
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.4e-260 902.1 618 69.4
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.3e-249 865.1 587 70.2
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.7e-243 845.5 605 63.1
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 3.3e-241 838.6 600 63.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.5e-233 813.1 491 76.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 7.3e-233 810.8 604 60.8
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 9.6e-225 783.9 600 60.2
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 3.0e-218 762.3 557 63.4
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.4e-212 742.7 428 79.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-202 709.5 410 78.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.4e-191 672.9 462 68.4
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 5.7e-185 651.7 381 78.2
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.8e-178 630.2 411 71.0
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.3e-177 625.5 352 82.1
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 3.4e-129 466.5 246 84.6
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.8e-129 465.7 462 53.2
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.3e-117 427.2 239 82.4
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.9e-87 327.8 202 76.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.7e-83 313.5 188 74.5
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 9.3e-79 298.9 169 79.3
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 3.1e-74 283.9 178 74.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.7e-62 244.2 130 85.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 6.3e-59 233.0 122 85.2
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 4.8e-51 206.8 155 61.3
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.8e-51 206.8 345 36.8
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.2e-51 206.1 160 59.4
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.0e-44 184.9 108 78.7
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 7.0e-42 176.4 121 65.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.7e-40 171.8 83 89.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.8e-35 154.5 103 73.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 9.5e-31 139.4 87 72.4
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.4e-29 135.6 149 51.7
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.3e-29 134.8 87 71.3
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.3e-29 134.8 87 71.3
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.7e-28 130.2 211 35.1
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 9.8e-28 129.4 66 84.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 7.7e-25 119.8 478 25.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.6e-24 116.3 82 70.7
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 2.1e-22 111.7 225 30.2
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 3.0e-21 107.8 51 88.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 9.8e-20 102.8 57 80.7
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.2e-19 101.7 56 83.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.2e-19 101.7 56 83.9
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.9e-19 100.5 56 83.9
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 5.4e-18 97.1 208 26.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.0e-18 96.7 56 80.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-17 95.5 79 58.2
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.6e-17 95.5 138 39.9
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-15 87.8 51 82.4
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-15 87.8 51 82.4
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 1.6e-14 85.5 56 71.4
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.0e-13 80.9 79 53.2
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.4e-10 72.4 32 87.5
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.3e-07 61.2 261 24.9
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.3e-07 61.2 261 24.1


User provided reference genes

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