Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 0.0e+00 1093.2 647 100.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.6e-113 413.7 660 45.0
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.8e-107 392.9 592 46.6
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 3.4e-105 386.7 656 43.0
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.6e-102 377.9 648 45.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 5.9e-97 359.4 588 41.7
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 9.7e-92 342.0 459 49.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.4e-90 338.2 615 43.1
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 8.5e-88 328.9 597 41.4
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.5e-87 328.2 603 42.3
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.9e-87 327.8 610 41.3
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.6e-86 324.7 599 41.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.5e-80 302.8 700 37.1
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.2e-79 300.1 593 41.3
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 7.2e-79 299.3 659 36.1
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.6e-78 298.1 661 36.5
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.7e-78 297.4 613 37.5
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.6e-78 297.0 624 41.0
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.7e-78 296.6 656 37.0
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-77 295.0 611 37.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.8e-77 294.7 624 36.2
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.0e-76 291.2 629 36.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-76 291.2 593 40.3
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.4e-76 290.0 607 38.1
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 5.7e-76 289.7 654 37.2
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.7e-75 288.1 611 38.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.2e-75 287.7 639 37.9
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.3e-75 285.8 606 37.3
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.1e-74 283.9 594 36.9
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 4.1e-74 283.5 635 36.1
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 7.0e-74 282.7 588 39.8
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.2e-73 282.0 655 36.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-73 282.0 610 36.9
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-73 281.2 613 37.0
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 3.5e-73 280.4 630 37.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.2e-72 277.7 604 38.6
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.9e-72 277.3 283 59.4
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.0e-72 276.6 617 37.1
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 6.5e-72 276.2 615 35.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 8.5e-72 275.8 606 41.3
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.1e-71 275.4 605 36.7
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.1e-71 275.4 620 37.7
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.5e-71 274.2 587 38.0
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 4.2e-71 273.5 588 36.2
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 7.2e-71 272.7 615 37.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-70 271.6 344 50.3
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 4.7e-70 270.0 625 35.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 6.1e-70 269.6 619 35.4
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.0e-70 269.2 586 37.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 8.0e-70 269.2 627 36.8
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.2e-68 265.4 601 37.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.2e-68 265.4 641 38.2
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 4.4e-68 263.5 620 36.0
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 5.7e-68 263.1 597 36.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.5e-68 262.7 616 36.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.7e-67 261.5 596 39.1
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.8e-67 260.8 642 35.2
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.9e-67 260.0 610 36.7
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.3e-67 259.6 601 36.4
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 6.3e-67 259.6 588 37.2
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 8.3e-67 259.2 722 33.0
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 8.3e-67 259.2 579 35.9
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.1e-66 258.8 282 54.6
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 4.1e-66 256.9 601 39.6
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.0e-66 256.1 635 33.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.7e-65 254.2 613 34.7
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 4.5e-65 253.4 588 35.9
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.9e-64 250.8 254 62.6
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.5e-63 248.4 597 35.2
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.9e-63 248.1 605 35.9
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 3.3e-63 247.3 401 45.4
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.2e-63 246.9 353 45.3
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.1e-62 244.6 630 33.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.8e-62 244.2 613 35.7
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 8.0e-62 242.7 268 55.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.8e-61 241.5 580 35.2
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.5e-60 238.4 254 55.5
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.6e-60 237.7 588 35.5
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.6e-60 237.7 606 35.0
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 9.8e-60 235.7 589 34.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.3e-59 235.3 616 34.1
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 6.3e-59 233.0 604 34.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 5.4e-58 229.9 590 34.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.0e-57 228.0 619 34.4
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.5e-57 227.3 610 34.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.5e-57 227.3 621 33.2
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.6e-57 226.9 584 33.9
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.6e-57 226.9 618 33.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.9e-57 226.5 609 35.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.9e-57 226.5 539 36.9
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.9e-56 224.2 610 33.8
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.9e-56 223.8 706 31.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 5.0e-56 223.4 602 35.2
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 6.6e-56 223.0 582 34.4
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.1e-55 222.2 595 34.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.1e-55 222.2 238 55.9
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.9e-55 221.5 577 38.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 7.3e-55 219.5 580 38.3
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.2e-54 218.8 245 63.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-53 215.7 306 45.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-53 215.7 584 38.7
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.4e-53 215.3 585 36.2
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.3e-53 214.5 610 32.5
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 4.0e-53 213.8 306 45.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 4.0e-53 213.8 607 32.5
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.0e-53 213.8 603 36.7
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 6.8e-53 213.0 330 44.8
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-52 211.1 306 44.8
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.6e-52 211.1 306 44.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 7.5e-52 209.5 627 33.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 9.8e-52 209.1 617 32.7
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 9.8e-52 209.1 605 32.7
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.8e-52 209.1 471 38.0
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-51 208.8 388 40.2
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.2e-51 208.0 594 32.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 8.3e-51 206.1 586 34.0
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.2e-50 204.1 628 31.4
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.2e-50 204.1 346 42.8
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 7.0e-50 203.0 581 33.4
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 4.6e-49 200.3 600 33.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.7e-48 198.4 614 32.2
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.7e-48 198.4 269 54.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.9e-47 194.9 617 31.3
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.3e-47 194.1 230 50.9
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.3e-47 194.1 230 50.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.2e-46 192.2 614 31.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 9.8e-44 182.6 235 50.2
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.7e-43 180.6 628 29.9
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 9.2e-42 176.0 575 31.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.2e-41 175.6 574 30.8
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 7.8e-41 172.9 459 33.6
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.0e-40 172.6 567 28.7
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.3e-39 167.5 483 33.1
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 3.3e-39 167.5 480 31.0
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 7.3e-39 166.4 600 30.2
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 7.6e-36 156.4 584 28.3
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 7.6e-36 156.4 321 35.8
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 9.9e-36 156.0 580 27.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.9e-35 153.7 229 45.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.4e-35 153.3 252 40.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-34 152.5 229 45.0
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.4e-34 151.4 599 32.7
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 9.6e-31 139.4 229 39.7
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-29 135.6 269 39.4
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 3.5e-25 120.9 370 28.1
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 4.6e-25 120.6 146 65.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.9e-24 117.5 223 33.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.9e-23 115.2 216 47.7
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.0e-20 105.1 229 36.2
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-19 102.4 332 33.1
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.9e-19 100.5 246 41.5
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 7.1e-18 96.7 82 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.6e-17 95.5 170 34.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.6e-17 95.5 297 29.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.3e-15 86.7 91 51.6
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.3e-15 86.7 157 38.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 9.6e-15 86.3 100 48.0
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.6e-14 85.5 185 34.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.4e-13 82.4 121 44.6
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 7.6e-12 76.6 57 63.2
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.6e-12 76.6 49 71.4
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.6e-12 76.6 49 71.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 1.2e-09 69.3 127 41.7
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.2e-09 69.3 405 24.4
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 7.9e-09 66.6 260 25.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.9e-09 66.6 140 40.0
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.1e-07 62.8 120 38.3
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 2.5e-07 61.6 85 42.4
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.3e-07 61.2 140 39.3
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 9.6e-07 59.7 49 57.1
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.3e-06 59.3 49 57.1
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.8e-06 58.2 68 55.9
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.7e-06 57.8 145 36.6
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 4.8e-06 57.4 49 53.1


User provided reference genes

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