Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.3e-176 622.1 309 100.0
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.4e-175 617.8 309 99.0
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 8.9e-152 540.4 309 84.5
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.0e-147 526.9 309 81.9
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 5.2e-144 514.6 304 79.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.0e-143 512.7 309 79.6
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 7.5e-143 510.8 304 78.9
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.2e-141 505.4 304 78.6
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 5.4e-141 504.6 309 77.0
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.1e-141 504.2 302 78.1
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.5e-140 501.9 302 78.1
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.9e-138 496.1 305 76.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.2e-137 493.4 305 76.4
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 3.1e-136 488.8 303 74.6
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 5.2e-136 488.0 304 75.3
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 4.4e-135 485.0 308 75.0
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 9.9e-135 483.8 294 76.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.9e-134 482.3 303 74.3
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.9e-134 481.5 300 73.7
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-133 480.3 305 73.1
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.4e-133 479.2 307 72.6
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 9.2e-133 477.2 304 74.0
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 6.0e-132 474.6 306 73.5
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.3e-131 473.4 300 72.7
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.7e-131 473.0 304 73.0
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.7e-131 473.0 300 72.7
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.3e-131 472.6 296 73.6
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 3.9e-131 471.9 305 73.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 6.6e-131 471.1 299 72.9
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.3e-130 468.8 306 72.5
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 5.6e-130 468.0 304 71.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 7.3e-130 467.6 304 72.7
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.6e-129 466.5 302 72.2
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 2.1e-129 466.1 305 71.1
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.1e-129 466.1 304 72.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 4.7e-129 464.9 305 71.8
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 8.1e-129 464.2 295 73.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 8.1e-129 464.2 305 71.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.4e-128 463.4 304 72.7
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.8e-128 463.0 301 70.8
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.8e-128 463.0 303 72.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 2.4e-128 462.6 298 71.8
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.1e-128 462.2 299 70.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 4.0e-128 461.8 301 71.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 5.2e-128 461.5 306 70.9
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 5.2e-128 461.5 305 71.1
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 5.2e-128 461.5 304 71.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 8.9e-128 460.7 304 71.7
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.2e-127 460.3 304 71.4
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 2.6e-127 459.1 304 70.4
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 3.4e-127 458.8 299 70.2
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 3.4e-127 458.8 296 73.0
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 4.4e-127 458.4 304 70.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 4.4e-127 458.4 302 71.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 4.4e-127 458.4 304 69.4
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.4e-127 458.4 299 72.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 5.8e-127 458.0 301 69.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 9.9e-127 457.2 304 71.1
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.7e-126 456.4 301 70.8
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 6.4e-126 454.5 295 71.9
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 8.4e-126 454.1 295 71.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 8.4e-126 454.1 306 69.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.9e-125 453.0 299 69.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.9e-125 453.0 301 70.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.4e-125 452.6 299 69.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.2e-125 452.2 306 70.9
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-124 449.5 299 69.2
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.1e-124 449.5 303 69.3
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 6.0e-124 448.0 304 70.1
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 6.0e-124 448.0 301 69.4
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 7.8e-124 447.6 304 68.8
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.6e-122 441.4 306 67.3
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 5.6e-122 441.4 380 60.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.3e-121 440.3 306 67.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-121 439.9 306 67.0
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.8e-121 439.1 306 67.0
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 3.6e-121 438.7 374 60.4
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.1e-120 437.2 303 67.3
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.8e-120 436.4 306 66.3
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.1e-120 435.6 304 69.4
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.0e-120 435.3 311 66.6
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 5.3e-120 434.9 300 69.7
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 9.0e-120 434.1 310 65.8
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 9.0e-120 434.1 305 67.9
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 9.0e-120 434.1 306 66.3
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.2e-119 433.7 303 67.0
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 2.0e-119 433.0 306 66.7
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.0e-119 433.0 304 65.8
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.6e-119 432.6 306 66.0
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.8e-119 431.4 306 66.0
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-118 430.3 306 65.7
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.2e-118 429.5 306 66.3
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 3.8e-118 428.7 307 65.1
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.1e-117 427.2 341 62.5
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.4e-117 426.8 302 68.5
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.2e-116 423.7 314 66.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.1e-116 422.9 306 65.0
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 1.3e-115 420.2 304 65.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.1e-114 417.2 314 63.4
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.5e-114 416.8 328 61.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.1e-113 412.9 304 65.1
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.6e-111 406.0 268 72.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 2.3e-107 392.9 304 62.5
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.9e-107 392.1 271 67.2
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 3.3e-106 389.0 304 61.8
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 6.2e-105 384.8 256 68.8
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 9.0e-104 380.9 259 69.5
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.6e-103 379.4 304 61.8
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 7.6e-95 351.3 302 54.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.9e-94 349.4 234 68.4
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 3.2e-93 345.9 304 57.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 1.0e-91 340.9 262 67.6
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 3.1e-88 329.3 299 52.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 3.4e-87 325.9 291 55.0
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.9e-85 320.1 198 76.3
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 4.2e-85 318.9 213 68.1
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.8e-83 313.5 174 82.2
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 4.3e-82 308.9 174 80.5
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 8.8e-75 284.6 210 62.4
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 9.4e-69 264.6 175 72.6
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.1e-64 248.1 236 48.7
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.0e-62 244.6 186 65.6
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 9.4e-61 238.0 142 76.8
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 7.2e-53 211.8 187 52.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-46 191.4 170 54.7
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-45 188.0 132 65.9
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 8.0e-44 181.8 129 67.4
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 9.8e-42 174.9 104 79.8
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 4.1e-40 169.5 130 63.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.2e-39 167.9 104 76.0
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 5.9e-39 165.6 133 60.9
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.3e-35 153.7 105 67.6
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.4e-32 143.7 102 66.7
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.7e-31 140.2 96 68.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.3e-30 137.1 107 60.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.1e-24 118.2 76 68.4
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.3e-17 94.7 52 76.9


User provided reference genes

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