Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.5e-121 438.3 227 100.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.7e-107 392.9 227 87.2
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 88.5
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 84.6
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.7e-105 385.6 227 84.6
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 85.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.0e-105 384.4 227 84.6
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.3e-104 382.5 226 86.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 84.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.9e-104 381.7 228 83.8
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 83.7
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 84.6
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 82.9
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 82.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 82.4
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 83.3
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 83.3
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 83.7
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 84.2
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.3
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 82.8
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 82.4
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 81.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 83.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 84.2
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 82.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 83.7
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.9
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 83.3
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.8
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 82.4
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 83.7
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 81.9
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 81.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 84.6
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-101 373.2 228 83.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 81.5
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.4e-101 372.5 226 81.9
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.9
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.1
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 81.5
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.1
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 80.6
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.4e-100 368.6 216 84.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 81.1
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 4.4e-100 368.2 216 84.3
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 81.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 79.7
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 80.2
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-99 366.3 216 84.3
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-99 366.3 216 84.3
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.2e-99 365.9 214 85.0
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 80.2
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 80.2
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 80.2
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-98 363.6 230 81.3
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-98 363.2 228 83.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.4e-98 363.2 229 81.7
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 79.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-98 363.2 226 82.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 79.7
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 81.1
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 80.2
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.4e-98 362.5 229 80.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 81.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 81.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.2e-98 362.1 219 83.6
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 81.5
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 79.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 7.1e-98 360.9 228 81.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-97 360.1 214 83.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.2e-97 360.1 214 82.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.6e-97 359.8 218 83.0
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.6e-97 359.8 219 82.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.1e-97 359.4 229 80.3
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 2.7e-97 359.0 215 82.8
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 6.0e-97 357.8 207 85.0
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 7.8e-97 357.5 217 82.9
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.0e-96 357.1 217 82.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.3e-96 356.7 227 79.3
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.7e-96 356.3 227 78.4
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 79.3
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.0e-96 355.5 226 79.6
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.9e-96 355.1 227 78.4
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.1e-95 353.6 227 78.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.5e-95 353.2 217 81.6
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.9e-95 352.8 217 82.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.5e-95 352.4 225 78.2
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.3e-95 352.1 214 80.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 4.3e-95 351.7 218 82.1
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 4.3e-95 351.7 227 77.5
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 5.6e-95 351.3 217 81.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 81.3
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.3e-94 350.1 206 84.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.3e-94 350.1 233 76.8
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 80.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.8e-94 349.0 205 83.4
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 6.2e-94 347.8 214 82.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 8.1e-94 347.4 228 77.6
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.4e-93 346.7 215 79.1
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 227 78.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 4.4e-92 341.7 206 81.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 4.4e-92 341.7 214 79.0
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 7.6e-92 340.9 217 80.2
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 8.4e-91 337.4 214 78.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.4e-90 335.9 225 76.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-89 333.6 265 66.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.1e-89 332.8 213 78.4
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.1e-87 327.0 202 82.2
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.9e-87 326.2 227 75.3
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-86 323.6 228 71.9
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.5e-84 316.6 227 72.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-83 313.5 226 70.4
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.9e-82 309.7 190 80.5
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 2.4e-82 309.3 191 79.6
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 5.4e-82 308.1 195 77.4
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-80 302.8 195 78.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.1e-77 293.9 226 66.8
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.1e-74 283.9 214 68.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.4e-74 283.5 224 68.3
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.2e-74 282.3 169 83.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.5e-71 272.7 164 82.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.8e-69 266.5 229 63.8
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.5e-68 261.9 164 80.5
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 5.8e-68 261.5 209 66.0
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.7e-67 260.0 193 71.0
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 2.9e-67 259.2 227 63.9
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.9e-66 256.5 150 87.3
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.1e-65 251.5 160 77.5
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.3e-64 249.6 197 69.0
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.5e-60 236.9 237 54.9
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.0e-60 236.5 153 74.5
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.8e-59 232.3 155 75.5
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 5.7e-55 218.4 215 53.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.2e-50 202.6 201 55.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 3.2e-50 202.6 131 71.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 6.1e-41 171.8 100 80.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.5e-36 156.0 108 72.2
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.7e-36 154.8 115 67.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.7e-31 138.7 109 67.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 6.3e-30 135.2 92 70.7
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.1e-29 132.5 87 73.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.6e-25 119.4 113 59.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 4.0e-24 115.9 135 48.9
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.7e-19 100.5 63 74.6
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.7e-17 92.4 51 88.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 8.3e-14 81.6 97 48.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.4e-13 80.1 74 63.5
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.7e-11 73.9 208 29.8
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 7.3e-10 68.6 68 52.9
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.6e-09 67.4 114 38.6
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.5e-07 58.5 63 54.0


User provided reference genes

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