Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.1e-196 688.3 366 100.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.9e-178 628.6 372 93.8
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.7e-115 419.5 381 66.1
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 3.8e-101 372.5 332 67.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 5.5e-100 368.6 390 59.5
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 5.5e-100 368.6 387 61.2
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 3.6e-99 365.9 374 59.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.9e-98 362.5 341 64.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 7.4e-97 358.2 385 60.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.7e-97 357.8 405 57.5
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-96 357.5 381 61.4
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.6e-96 357.1 440 55.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.2e-96 356.7 405 57.5
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.2e-96 356.7 405 57.5
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 6.5e-93 345.1 382 58.9
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.5e-93 344.7 381 59.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.6e-91 340.5 382 57.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.6e-91 339.3 367 59.7
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.6e-91 339.3 410 55.4
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 3.6e-91 339.3 378 57.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.1e-91 338.6 389 57.3
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 6.1e-91 338.6 383 57.7
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.0e-90 336.3 419 53.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.6e-89 333.2 371 58.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 3.3e-89 332.8 357 59.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.7e-89 331.3 422 53.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.7e-88 330.5 373 57.4
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.7e-88 330.5 386 58.3
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.8e-88 329.7 438 52.7
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.8e-88 328.9 308 62.7
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.4e-87 327.4 395 54.7
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.4e-87 327.4 382 56.3
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 4.1e-87 325.9 390 57.4
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 9.1e-87 324.7 308 62.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.2e-86 324.3 390 55.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.5e-86 323.9 488 48.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.5e-86 323.9 469 48.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 5.9e-86 322.0 393 56.5
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.0e-85 321.2 353 59.5
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.7e-85 320.5 382 56.0
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 5.5e-84 315.5 404 53.7
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 5.5e-84 315.5 377 55.2
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.7e-83 312.4 374 54.3
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.4e-82 310.8 387 55.6
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.3e-82 310.1 380 54.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.0e-82 309.7 395 53.7
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.9e-82 309.3 413 53.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.9e-82 309.3 387 55.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.0e-81 307.0 353 55.8
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.6e-81 306.6 379 51.7
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 9.7e-81 304.7 396 52.3
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 9.7e-81 304.7 386 54.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.8e-80 303.1 413 52.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 3.7e-80 302.8 390 52.3
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.3e-80 302.0 302 62.6
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 6.3e-80 302.0 380 53.9
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.1e-79 301.2 392 52.6
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-79 299.7 458 48.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 9.1e-79 298.1 340 55.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.2e-78 297.7 376 54.0
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.6e-78 297.4 397 52.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.6e-78 297.4 397 52.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.6e-78 296.6 375 51.7
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.6e-78 296.6 400 51.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 7.7e-78 295.0 382 51.3
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.1e-76 291.2 385 53.0
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-76 291.2 385 53.0
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-76 291.2 383 52.0
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 7.2e-76 288.5 353 55.2
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 7.2e-76 288.5 437 49.7
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.6e-75 287.3 381 51.2
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.1e-75 287.0 415 48.7
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.7e-75 286.6 412 49.5
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 8.0e-75 285.0 381 53.3
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.4e-74 284.3 412 49.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.4e-74 284.3 368 50.5
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 8.8e-74 281.6 396 51.5
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.2e-73 281.2 400 51.0
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.5e-73 280.8 379 50.7
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.7e-72 277.3 404 48.8
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 4.8e-72 275.8 392 51.8
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.1e-71 273.1 420 46.9
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 5.3e-71 272.3 392 48.7
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 7.7e-70 268.5 385 48.1
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.3e-69 267.7 382 50.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.8e-69 266.2 346 50.3
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 8.5e-69 265.0 437 46.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.6e-67 260.8 472 43.0
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.7e-67 260.0 346 50.9
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.7e-67 260.0 473 42.9
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.3e-66 256.9 467 44.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 8.8e-66 255.0 501 41.3
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 3.4e-65 253.1 441 44.7
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-64 251.1 470 43.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.2e-64 250.4 386 50.5
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 3.7e-64 249.6 468 43.6
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.7e-64 249.6 350 50.0
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 5.4e-63 245.7 502 41.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.6e-62 244.2 441 43.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.6e-62 244.2 464 43.3
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.0e-62 243.8 467 42.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.0e-62 243.8 467 42.4
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 3.8e-61 239.6 482 41.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.5e-61 238.8 458 41.3
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.5e-60 237.7 499 39.7
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.5e-60 237.7 494 40.1
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 4.9e-56 222.6 338 49.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.1e-55 221.5 480 39.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.8e-55 220.7 469 40.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.0e-54 217.2 277 52.7
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.7e-53 214.2 372 44.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.3e-53 213.8 341 44.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 6.6e-53 212.2 436 40.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-52 210.7 291 51.9
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.3e-52 209.5 409 43.3
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 4.3e-52 209.5 374 48.1
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.9e-48 196.8 382 42.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 6.4e-48 195.7 434 40.8
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.6e-44 182.6 326 42.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 5.6e-44 182.6 345 42.6
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 4.7e-43 179.5 358 41.3
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-41 174.5 451 35.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 4.4e-41 172.9 316 44.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 8.3e-40 168.7 399 37.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 7.0e-39 165.6 272 44.9
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.9e-32 142.9 378 37.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 7.1e-31 139.0 299 41.8
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.7e-29 134.4 340 36.8
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.3e-28 129.0 138 55.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.0e-18 96.7 99 57.6
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.5e-17 94.7 266 35.0
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.9e-16 89.7 82 61.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.2e-14 85.1 349 33.0
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.3e-13 80.9 78 62.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 7.3e-12 75.9 200 37.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 6.2e-11 72.8 78 59.0
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.8e-10 71.2 113 42.5
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 3.1e-10 70.5 78 51.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.0e-09 67.8 396 25.8
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-08 63.9 69 55.1
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.4e-08 62.8 72 50.0
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 8.4e-08 62.4 63 55.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.9e-07 61.2 63 55.6
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.6e-06 56.6 64 56.2


User provided reference genes

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