Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.5e-212 742.7 388 100.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 5.3e-186 654.4 388 86.6
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 5.3e-186 654.4 388 87.6
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 4.5e-185 651.4 388 87.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.4e-181 639.8 386 85.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 4.3e-180 634.8 388 84.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 7.4e-180 634.0 388 84.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.2e-174 616.7 388 81.7
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.6e-174 616.3 385 82.1
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.9e-173 611.7 385 82.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 6.7e-173 610.9 385 81.6
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.6e-172 609.0 388 82.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 9.7e-172 607.1 385 81.0
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.7e-172 607.1 388 81.7
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.4e-170 603.2 388 78.9
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 7.0e-170 600.9 387 79.3
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.0e-168 597.0 388 80.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.3e-165 585.9 384 77.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.0e-165 585.5 388 77.6
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-164 581.6 388 77.6
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 3.7e-163 578.6 388 77.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.8e-163 578.2 388 77.3
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.4e-162 576.6 388 76.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 9.1e-162 573.9 388 75.8
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.2e-161 573.5 386 75.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.7e-160 569.7 388 76.8
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.7e-160 569.7 388 76.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.7e-160 569.7 389 76.3
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.5e-159 565.8 388 74.7
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 3.2e-159 565.5 386 73.8
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 7.2e-159 564.3 387 75.5
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.2e-158 563.5 388 75.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.3e-157 559.3 388 75.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 3.0e-157 558.9 383 74.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.8e-157 557.4 388 74.5
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.2e-156 557.0 388 75.3
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.5e-156 556.6 388 73.5
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.5e-156 556.6 388 75.0
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 2.0e-156 556.2 390 72.8
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.0e-156 556.2 388 75.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.3e-156 555.4 388 75.0
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.3e-155 553.5 388 72.4
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 8.2e-155 550.8 388 72.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 72.4
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 5.3e-154 548.1 389 73.5
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.3e-154 548.1 388 74.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 5.3e-154 548.1 388 74.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 9.1e-154 547.4 386 73.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 9.1e-154 547.4 388 72.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.0e-153 546.2 377 74.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.5e-153 545.4 386 72.5
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.5e-153 545.0 387 72.4
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.3e-152 543.5 406 71.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 71.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.2e-151 538.5 389 72.5
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 5.5e-151 538.1 388 71.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.7e-150 535.8 383 72.3
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.7e-150 535.8 393 71.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 3.6e-150 535.4 350 78.9
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 8.0e-150 534.3 387 71.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.0e-150 534.3 388 72.2
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.4e-149 533.5 390 71.5
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.3e-149 532.7 387 71.6
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.3e-149 532.7 389 71.2
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.2e-149 531.6 383 71.5
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 8.8e-149 530.8 387 70.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 3.4e-148 528.9 389 70.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.2e-147 526.2 383 71.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.2e-147 526.2 385 70.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.8e-147 525.8 388 69.8
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.8e-146 523.1 399 69.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-146 523.1 388 69.6
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 5.4e-146 521.5 414 67.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.6e-145 520.0 388 68.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.7e-145 519.2 388 70.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 3.5e-145 518.8 389 70.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.7e-145 517.7 388 69.3
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.0e-144 517.3 392 70.4
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.1e-142 509.6 388 68.6
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-141 506.5 420 64.3
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-141 506.1 420 64.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.0e-141 505.4 348 75.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.8e-141 504.6 388 68.0
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.6e-140 502.7 388 68.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.4e-140 501.9 420 64.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.2e-139 499.6 385 68.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.8e-139 499.2 386 66.8
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.7e-139 498.8 387 68.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.7e-139 498.8 420 63.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.4e-138 496.1 386 68.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 3.1e-138 495.7 385 68.6
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 9.2e-138 494.2 349 71.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.5e-137 491.9 386 68.1
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.5e-137 491.9 386 68.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 7.8e-137 491.1 348 73.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.0e-136 490.7 385 68.1
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.3e-136 489.6 385 67.3
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.8e-136 488.8 385 67.8
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.6e-136 488.0 385 67.3
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 8.6e-136 487.6 385 67.8
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.5e-135 486.9 385 67.5
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 7.3e-135 484.6 386 67.1
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 7.3e-135 484.6 385 68.1
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 9.5e-135 484.2 384 68.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.6e-134 482.3 386 68.1
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 8.0e-134 481.1 385 68.1
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.2e-132 477.2 341 73.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-132 476.1 388 66.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 8.3e-131 471.1 385 66.2
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.5e-127 459.5 337 70.0
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 4.3e-127 458.8 381 65.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.2e-126 457.2 390 64.6
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 5.2e-125 451.8 399 61.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.2e-123 446.4 385 63.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 5.1e-120 435.3 389 59.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 6.6e-120 434.9 394 60.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 9.5e-119 431.0 398 60.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 4.7e-118 428.7 399 57.1
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.4e-116 422.5 378 60.3
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 7.5e-116 421.4 392 57.7
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.7e-112 410.2 388 58.8
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.4e-106 388.7 388 57.2
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.7e-99 367.1 297 61.6
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.6e-96 355.1 271 67.9
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 3.8e-91 339.3 419 49.2
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.6e-89 334.0 440 45.7
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.4e-85 320.9 226 72.1
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.2e-82 309.3 296 59.1
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 9.3e-82 308.1 368 47.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.0e-80 303.1 265 60.8
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 6.1e-73 278.9 386 42.7
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.4e-61 240.4 466 35.8
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.2e-60 238.0 164 75.0
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-54 217.2 142 79.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.2e-50 203.0 244 47.1
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-47 193.0 152 71.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.5e-44 183.3 173 60.1
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.0e-39 167.5 128 68.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.9e-36 156.0 400 32.2
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-31 141.7 149 56.4
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-29 135.2 155 53.5
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.8e-29 134.4 89 75.3
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.9e-28 129.4 79 78.5
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.3e-27 128.3 108 60.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.9e-27 127.1 177 45.8
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 8.6e-27 125.6 138 55.1
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.8e-24 115.9 120 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.6e-23 114.0 213 37.6
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 7.8e-20 102.4 126 53.2
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 101.7 126 53.2
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 101.7 82 61.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-18 97.4 87 60.9
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-16 92.0 125 49.6
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-16 92.0 82 57.3
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 4.9e-14 83.2 104 50.0
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.4e-13 80.9 51 72.5
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.4e-13 79.7 43 93.0
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.7e-12 77.4 41 92.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.7e-11 74.7 101 47.5
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.5e-10 71.6 100 47.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.5e-10 71.6 94 43.6
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.6e-09 67.0 51 58.8
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 4.0e-08 63.5 38 84.2
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.5e-07 61.6 38 81.6
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 2.6e-07 60.8 36 80.6
CBR_g19142 Chara braunii HOM05D007151 ORTHO05D009056 6.4e-06 56.2 122 29.5
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 6.4e-06 56.2 83 44.6


User provided reference genes

Program Settings