Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 6.6e-117 424.1 219 100.0
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 5.4e-79 298.1 230 70.4
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 2.1e-78 296.2 209 71.8
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.7e-78 295.8 190 78.9
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.7e-77 293.1 209 74.2
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.9e-77 292.0 218 71.1
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.5e-76 289.3 196 74.5
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 7.4e-76 287.7 182 77.5
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 7.4e-76 287.7 204 70.6
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 7.4e-76 287.7 198 71.2
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.6e-75 285.4 200 71.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 8.1e-75 284.3 197 72.1
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.4e-74 283.5 195 73.8
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.8e-74 283.1 198 70.2
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 3.1e-74 282.3 200 71.0
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 3.1e-74 282.3 200 70.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 4.0e-74 282.0 196 70.9
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.3e-74 281.6 194 71.6
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 5.3e-74 281.6 200 69.5
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 6.9e-74 281.2 214 66.8
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 9.0e-74 280.8 191 75.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.5e-73 280.0 194 71.1
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 2.6e-73 279.3 200 69.5
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.6e-73 279.3 192 71.9
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 3.4e-73 278.9 198 70.7
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 9.9e-73 277.3 219 64.4
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 9.9e-73 277.3 192 70.8
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.3e-72 276.9 189 75.1
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 1.7e-72 276.6 192 68.8
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.2e-72 276.2 194 70.6
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 6.4e-72 274.6 197 70.6
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.4e-72 274.2 195 70.3
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.1e-71 273.9 212 65.6
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.1e-71 273.9 196 69.4
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.4e-71 273.5 204 67.6
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.9e-71 273.1 192 68.2
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 1.9e-71 273.1 199 70.4
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 4.2e-71 271.9 198 68.7
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 5.5e-71 271.6 209 66.0
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 7.1e-71 271.2 195 69.7
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 9.3e-71 270.8 196 67.9
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 9.3e-71 270.8 189 72.5
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-70 270.4 193 71.0
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.2e-70 270.4 192 68.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.7e-70 269.2 193 70.5
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 2.7e-70 269.2 201 66.7
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 3.5e-70 268.9 205 65.9
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 7.9e-70 267.7 212 65.1
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.9e-70 267.7 193 69.9
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 7.9e-70 267.7 199 67.8
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.0e-69 267.3 204 66.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.0e-69 267.3 194 69.1
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.0e-69 267.3 188 69.7
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 3.0e-69 265.8 193 67.9
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 8.7e-69 264.2 195 68.2
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 8.7e-69 264.2 192 67.7
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 2.5e-68 262.7 195 65.6
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 3.3e-68 262.3 191 69.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 5.6e-68 261.5 217 61.3
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 5.6e-68 261.5 218 63.3
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 7.4e-68 261.2 205 64.9
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 9.6e-68 260.8 176 73.9
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.3e-67 260.4 190 68.9
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-67 260.0 190 66.8
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 2.1e-67 259.6 201 63.2
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.8e-67 259.2 191 69.1
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 3.7e-67 258.8 192 65.1
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 3.7e-67 258.8 179 69.3
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 3.7e-67 258.8 215 60.5
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 8.1e-67 257.7 179 71.5
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.1e-66 257.3 190 67.9
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.4e-66 256.9 195 66.2
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.4e-66 256.9 190 68.4
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.8e-66 256.5 199 64.3
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 2.4e-66 256.1 187 69.5
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 3.1e-66 255.8 195 66.2
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 9.0e-66 254.2 189 67.2
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.2e-65 253.8 194 65.5
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 3.4e-65 252.3 144 83.3
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 1.3e-64 250.4 192 66.7
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.3e-64 250.4 190 66.8
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 2.2e-64 249.6 195 64.1
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 4.9e-64 248.4 195 63.6
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.4e-63 246.9 198 65.2
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.5e-63 246.1 196 64.8
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.5e-63 246.1 190 66.8
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.1e-63 244.6 144 81.2
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.2e-62 243.8 190 65.3
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 3.5e-62 242.3 190 64.7
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 4.6e-62 241.9 189 65.1
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 6.0e-62 241.5 189 65.1
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 4.3e-60 235.3 191 63.9
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 9.6e-60 234.2 293 48.1
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 9.6e-60 234.2 264 50.0
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 9.0e-58 227.6 195 58.5
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 3.2e-55 219.2 192 58.3
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.2e-55 218.8 172 64.5
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 5.5e-55 218.4 182 58.8
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.3e-53 213.8 194 57.2
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 5.1e-53 211.8 191 57.6
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.5e-49 200.3 148 65.5
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 6.5e-48 194.9 154 62.3
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.1e-46 189.9 173 57.8
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.1e-46 188.3 156 61.5
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.9e-39 166.8 102 79.4
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 7.4e-36 154.8 170 50.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 9.7e-36 154.5 98 71.4
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.7e-35 153.7 170 50.6
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 8.2e-35 151.4 170 49.4
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.5e-33 145.6 143 53.1
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 9.7e-28 127.9 134 53.7
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.7e-27 127.1 80 71.2
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-27 126.7 78 75.6
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.8e-27 125.6 78 74.4
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.1e-26 122.9 78 73.1
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 2.2e-19 100.1 61 72.1
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 2.8e-19 99.8 217 34.1
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 6.3e-19 98.6 61 70.5
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 2.9e-16 89.7 86 55.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 4.2e-15 85.9 77 53.2
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-14 84.3 54 72.2
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.7e-09 66.6 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.3e-08 63.5 40 67.5
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 2.3e-08 63.5 88 51.1
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 6.6e-08 62.0 73 50.7
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 8.6e-08 61.6 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 3.6e-06 56.2 35 74.3


User provided reference genes

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