Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 0.0e+00 1122.8 590 100.0
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.7e-263 911.4 594 80.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 7.6e-261 903.7 600 79.8
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 9.0e-254 880.2 621 77.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.2e-250 869.8 595 78.5
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 8.7e-249 863.6 594 78.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.9e-248 862.4 599 77.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.2e-245 853.2 595 77.3
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 8.5e-244 847.0 600 76.7
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 7.9e-242 840.5 578 76.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.3e-241 839.0 598 74.7
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.0e-240 835.9 579 76.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.3e-239 833.2 599 74.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 4.8e-239 831.2 599 74.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 8.2e-239 830.5 588 75.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.1e-238 828.6 599 74.1
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.9e-238 827.4 596 74.5
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.4e-237 825.1 595 73.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.4e-237 825.1 593 74.7
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 5.9e-237 824.3 594 74.1
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.8e-236 821.6 597 74.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 5.0e-236 821.2 597 75.5
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.0e-236 821.2 601 74.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.1e-235 820.1 594 73.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.9e-235 819.3 594 74.1
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.5e-235 818.9 596 73.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.2e-235 818.1 594 73.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.5e-235 817.8 594 73.4
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 9.4e-235 817.0 594 73.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.1e-234 815.8 599 72.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.1e-234 814.3 593 74.2
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 6.1e-234 814.3 598 72.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.9e-234 813.9 594 73.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 7.9e-234 813.9 591 73.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.4e-233 813.1 594 73.4
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.8e-233 812.8 597 73.7
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.3e-233 812.4 593 74.0
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.0e-233 812.0 602 74.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.9e-233 811.6 514 83.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.8e-233 810.4 597 73.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 8.8e-233 810.4 593 72.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.1e-232 810.1 592 74.2
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.1e-232 810.1 587 73.3
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.3e-232 808.5 592 73.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.3e-232 808.5 597 72.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 7.4e-232 807.4 589 72.0
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 7.4e-232 807.4 593 73.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.7e-231 806.2 593 73.4
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.8e-231 805.4 593 72.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 6.3e-231 804.3 589 72.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 8.2e-231 803.9 595 73.8
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 8.2e-231 803.9 599 73.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.2e-231 803.9 593 72.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.1e-230 803.5 593 72.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.1e-230 803.5 597 72.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.1e-230 803.5 599 73.3
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.4e-230 803.1 600 72.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.4e-230 803.1 597 72.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.4e-230 803.1 599 72.8
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.4e-230 802.4 589 71.5
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 3.1e-230 802.0 592 73.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.1e-230 802.0 597 72.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.3e-230 801.2 597 72.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 5.3e-230 801.2 593 71.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 9.1e-230 800.4 598 72.1
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.0e-229 799.3 597 72.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 3.5e-229 798.5 594 71.7
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 5.9e-229 797.7 589 71.5
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.9e-229 797.7 589 71.8
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 5.9e-229 797.7 596 71.1
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-228 797.0 600 73.3
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.7e-228 796.2 596 70.6
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.2e-228 795.8 597 72.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.9e-228 795.4 589 71.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.8e-228 795.0 597 72.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 5.0e-228 794.7 604 71.2
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.0e-228 794.7 589 72.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.0e-228 794.7 589 71.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 6.5e-228 794.3 589 72.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-227 793.5 574 74.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.9e-227 792.7 589 71.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.5e-227 792.3 600 71.2
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.2e-227 792.0 589 70.8
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 5.5e-227 791.2 590 71.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 7.2e-227 790.8 598 70.9
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-226 790.0 599 70.8
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.6e-226 789.6 589 71.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.1e-226 789.3 593 71.8
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.1e-226 789.3 595 71.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-226 788.9 596 71.6
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 6.1e-226 787.7 592 71.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 6.7e-225 784.3 599 70.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 6.7e-225 784.3 630 68.3
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 8.8e-225 783.9 567 74.3
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.0e-224 782.7 565 75.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 4.4e-224 781.6 581 72.1
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 7.5e-224 780.8 592 70.6
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.3e-223 780.0 589 72.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.3e-223 780.0 511 79.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 8.2e-223 777.3 599 70.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.1e-222 775.0 589 71.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.6e-221 773.1 589 70.3
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-220 770.0 594 69.9
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.8e-220 768.5 699 62.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 5.0e-220 768.1 694 63.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 5.0e-220 768.1 589 71.3
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 8.5e-220 767.3 595 69.4
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.2e-219 765.4 594 69.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.1e-218 761.1 600 68.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.0e-217 758.8 594 68.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.2e-217 758.1 598 69.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 9.8e-216 753.8 594 67.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 8.0e-210 734.2 573 69.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.7e-207 726.5 608 67.1
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.1e-206 721.8 590 66.1
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.2e-202 710.3 576 66.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.2e-201 704.9 575 66.4
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.4e-198 696.8 511 74.8
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.2e-198 695.7 593 63.9
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 4.0e-193 678.7 588 64.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.5e-179 630.9 436 78.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.7e-178 628.6 594 60.3
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.0e-177 625.5 481 68.6
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.2e-175 619.8 510 69.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 8.1e-170 601.3 453 71.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.5e-160 570.5 528 61.0
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 8.4e-151 538.1 375 75.7
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.0e-144 516.9 327 84.1
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.0e-140 504.6 374 70.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 3.9e-140 502.7 533 53.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.9e-128 462.2 403 65.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.0e-127 461.5 572 54.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.4e-116 424.5 361 67.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.0e-112 410.6 252 84.5
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 7.5e-107 392.1 509 46.6
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.3e-95 354.8 555 41.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 3.1e-89 333.6 223 77.1
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.8e-83 312.0 229 75.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.7e-80 303.9 220 71.8
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 3.7e-66 256.9 212 64.2
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.7e-64 250.8 247 53.0
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.9e-58 229.9 356 39.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 6.6e-47 193.0 270 43.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 3.6e-45 187.2 114 81.6
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.4e-33 148.7 129 63.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.5e-30 137.9 137 58.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.1e-23 113.6 218 40.8
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.2e-19 102.4 80 63.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.1e-17 95.9 52 84.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.6e-16 92.0 104 51.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 8.8e-15 86.3 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 8.8e-15 86.3 52 86.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 7.4e-14 83.2 102 49.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.8e-13 81.3 86 54.7
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-12 79.3 65 66.2
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.9e-10 71.2 63 60.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.2e-08 65.9 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 5.1e-07 60.5 61 54.1
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 5.1e-07 60.5 61 54.1
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 1.1e-06 59.3 57 47.4
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.6e-06 58.2 240 25.4


User provided reference genes

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